“...und der eignen Kraft vertrauend steigt ein frei Geschlecht empor!”
This manual describes how to install and use Numdiff, a program which compares putatively similar files line by line and field by field, ignoring small numeric differences or/and different numeric formats.
Copyright © 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017 Ivano Primi ivprimi(at)libero(dot)it
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts. A copy of the license is included in GNU Free Documentation License.
| • Copying: | Numdiff Copying Conditions (GPL) | |
| • Acknowledgments: | Acknowledgments | |
| • Overview: | Introduction to numdiff | |
| • Installing: | How to install numdiff | |
| • Invoking numdiff: | How to use numdiff | |
| • ndselect: | (numdiff) ndselect. Selecting lines and fields | |
| • Invoking ndselect: | How to use ndselect | |
| • Filtering: | How to use the filter of numdiff | |
| • Warnings: | Various recommendations | |
| • GNU Free Documentation License: | The license covering this document | |
| • Index: | Complete index |
Next: Acknowledgments, Previous: Top, Up: Top [Contents][Index]
Numdiff (also written numdiff) is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
Numdiff is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.
I want to thank Mr. Norman Clerman norm(dot)opcon(at)fuse(dot)net for several suggestions he gave me to improve the readability and the effectiveness of the output produced by Numdiff. He also pointed out the need to implement a filter to resynchronize the lines between two files in case of addition or deletion of one or more lines. I have to give him credit for the urge to prepare the versions 4.x and 5.x of Numdiff.
Moreover, I want to thank my friends Mariapia Palombaro, since she removed some errors while reviewing the first version of this document, and Paolo Caramanica, who suggested me to add more information to the output of the option -S.
Next: Installing, Previous: Acknowledgments, Up: Top [Contents][Index]
Computer users often find occasion to ask how two files differ. Perhaps one file is a newer version of the other file. Or maybe the two files started out as identical copies but were changed by different people.
There are several ways to look at the differences between two
files. One way consists in looking at the series of lines
that were deleted from, inserted in, or changed in one file to produce
the other file.
The well-known diff program compares two files line by line,
finds groups of lines that differ, and reports each group of differing lines.
Without particular options, when comparing lines
the diff program considers any
change in the amount or in the type of the characters as a
difference. However, trough some command line options
the user can suppress the output of certain kinds of
differences that are not important to him.
For instance, diff provides options to ignore differences
in the amount of white space between words or lines, or
differences in alphabetic case.
Another way to look at the differences between two files consists in considering the words that were deleted from, inserted in, or changed in one file to produce the other file. Here “word” refers to a sequence of non white-space characters delimited by a couple of white-spaces, one before and the other one after the word.
The wdiff program by François Pinard
pinard(at)iro(dot)umontreal(dot)ca
compares words in two files and reports the differences.
Finally, one can regard the differences between two files as a
sequence of pairs of differing bytes.
The cmp program reports the differences between two files
byte by byte, instead of line by line or word by word.
As a result, it is often more useful than diff or wdiff
for comparing binary files.
However, none of these approaches turns out to be good when
you want to compare a couple of text files composed
partially or entirely by numerical fields.
In such a case what you want to obtain usually is a list of the numerical fields
in the second file which numerically differ
from the corresponding fields in the first file.
But, while a number can be written using different notations,
programs like diff or wdiff
can not recognize whether a difference between two numeric fields
is only due to the notation or is actually a difference of numerical
values.
For instance, 11.23 and 11.2300000
are the same number but represented in different ways.
If you are interested in the numerical values,
the difference in the representation is not meaningful
and then should be ignored. However, diff and wdiff
always consider the previous one as an actual difference: there
is no way for you to tell these programs to ignore it.
Another example of this type is given by 98765.4321 and 9.87654321E04. Here the difference is only due to the use of the scientific notation in place of the ordinary decimal notation.
In addition, depending on your country you could stick
to different conventions in writing numbers.
For example, the amount “three hundred millions and
fifty-two thousands of dollars and forty-six cents”
is usually written by an Italian accountant as 300.052.000,46$
while an American accountant would write 300,052,000.46$.
Of course, 300.052.000,46$ and 300,052,000.46$
represent the same amount of money but
diff and wdiff would report a difference,
which probably is not what you want in such a case.
Lastly, sometimes you could wish to ignore even differences in numerical values as long as they do not exceed a certain threshold. In other words, you could desire to suppress the report of all “small” numerical differences.
For example, it could happen that you want to ignore all numerical differences whose absolute value is not greater than 0.0001. If this is the case, then the numerical fields 33 and 33.00009 should be considered equal, while 33 and 33.00011 should be reported as different.
However, diff and wdiff can not be used
to ignore small numerical differences, since they
do not even know what a numerical difference is.
These are the reasons why I decided to implement a new program with
the capability to appropriately compare files containing numerical fields.
In writing this program I was inspired by ndiff,
a GPL’ed software by Nelson H. Baabe of the Salt Lake
City University. ndiff is actually a good tool,
and I used it for a while. But I did not
completely like the way it works, and so numdiff was conceived.
Although ndiff inspired numdiff, they are completely
different from the viewpoint of the source code:
numdiff has been entirely written from scratch
with the addition of code coming from GNU bc, GNU diff
and GNUlib.
In addition, the last versions of Numdiff offer much more
features than ndiff does.
numdiff can be used to compare putatively similar files
line by line and field by field, ignoring small numeric differences
or/and different numeric formats.
numdiff takes two mandatory arguments, the paths of the
two files to compare, and, after splitting them into lines
and the lines into fields
according to a given list of field delimiters, it compares
every field of every line of the first file with
the corresponding field of the second file.
What corresponding here exactly means
depends on the options passed to the program on
the command line. With no options, corresponding
means the field of the second file at the same position,
where position refers both to the line number and to the
location within the line.
If the compared fields are both legal numerical values,
then numdiff performs a numerical comparison
between them, otherwise it performs a literal comparison,
i.e. the usual byte-by-byte comparison.
In case of literal comparison, two fields are regarded
as equal if they are formed by the same sequence
of characters.
In case of numerical comparison and without specific
command line options, two fields are regarded as equal
if their numerical difference is zero.
Mind that, if you do not explicitly
specify a list of field delimiters by means of the option -s
or -D, numdiff takes as field delimiters
the characters newline (‘\n’, ASCII code 0x0A),
horizontal tabulation (‘\t’, ASCII code 0x09),
and blank (‘ ’, ASCII code 0x20).
For example, if the file list1 contains the data
accident 123 23Joshua 34.55 +3+4i water dog -3455.321 cat 2.345678e-9 .0005-6.23e2i
and file list2 contains the data
Accident 123 23456 34.5500 +3.0001+4i dog -3455.320098 Cat +2.345678e-9 -6.23e2i $$$ A new line
then the output of the command ‘numdiff list1 list2’ will be:
----------------
##1 #:1 <== accident
##1 #:1 ==> Accident
@ @@
##1 #:3 <== 23Joshua
##1 #:3 ==> 23456
@ @@
##1 #:5 <== +3+4i
##1 #:5 ==> +3.0001+4i
@ Absolute error = 1.0000000000e-4, Relative error = 2.0000000000e-5
##1 #>6 <== water
##1 ==>
@ Line 1 in file "list2" is shorter than expected!
----------------
##2 #:2 <== -3455.321
##2 #:2 ==> -3455.320098
@ Absolute error = 9.0200000000e-4, Relative error = 2.6104672633e-7
##2 #:3 <== cat
##2 #:3 ==> Cat
@ @@
##2 #:5 <== .0005-6.23e2i
##2 #:5 ==> -6.23e2i
@ Absolute error = 5.0000000000e-4, Relative error = 8.0256821830e-7
##2 <==
##2 #>6 ==> $$$
@ Line 2 in file "list1" is shorter than expected!
----------------
##3 <==
##3 #>1 ==> A new line
@ Line 3 in file "list1" is shorter than expected!
----------------
<==
##4 ==>
+++ File "list1" differs from file "list2"
At the same time numdiff will print the following error message
on stderr:
*** End of file "list1" reached while trying to read line 4.
File "list2" has more lines than file "list1",
line 4 is the last one read from file "list2"
It is worth remarking that numdiff can recognize complex numbers,
provided that they are written in the form a+bi or
a-bi with no extra characters between the values a, b and
the sign + or - (the symbol i,
used to represent the imaginary unit, can be changed by a suitable
command line option, see Invoking numdiff).
Do not worry if you do not know what complex numbers are:
probably you will never manage files containing complex numbers,
thus you can live happily without them. :)
We consider now an example which shows how Numdiff can
resynchronize the lines between two files in case of addition or deletion
of one or more lines.
The versions of Numdiff prior to 5 did not work well if
one of the two files to compare contains
in the middle some lines more or less than the other one.
For instance, if you have one file that is 1000 lines long that you
are comparing to a second file 1001 lines long, and except for that one
extra line, located, let us say, at line 500, the files are identical,
then numdiff version 4.x does not show only the one line difference:
once the files are out of synchronization numdiff 4.x reports
every line as different.
Since version 5 it is possible in such cases to activate a filter which handles
additions and deletions of lines.
There are several options ruling how the filter
actually works, and I will give later a detailed explanation
on how to use them to obtain each time the wished result.
The simplest way to activate the filter consists in
using the option -z @.
If bill1 and bill2 are given by
Month Expenses ------------------------- Jan09 $ 233.56 Feb09 $ 850.77 Mar09 $ 12.55 Apr09 $ 524.00 May09 $ 78.25 Jun09 $ 230.00 Jul09 $ 443.10 Aug09 $ 67.65 Sep09 $ 10.00 Oct09 $ 201.45 Nov09 $ 110.00 Dec09 $ 200.27 ------------------------- Total $ 2961.60
and
Month Expenses Jan09 $ 234.00 Mar09 $ 13.00 May09 $ 78.25 Jul09 $ 443.10 Sep09 $ 10.00 Nov09 $ 110.00 Jan10 $ 200.00 ------------------------- Total $ 1088.35
respectively, then the differences between the two files are:
The output of the command ‘numdiff -z @ -V bill1 bill2’ (I have added here the option -V to let Numdiff show which couples of lines it is comparing each time) shows exactly the expected differences:
----------------
##2 <== -------------------------
==>
----------------
##3 <== Jan09 $ 233.56
##2 ==> Jan09 $ 234.00
##3 #:3 <== 233.56
##2 #:3 ==> 234.00
@ Absolute error = 4.4000000000e-1, Relative error = 1.8838842268e-3
----------------
##4 <== Feb09 $ 850.77
==>
----------------
##5 <== Mar09 $ 12.55
##3 ==> Mar09 $ 13.00
##5 #:3 <== 12.55
##3 #:3 ==> 13.00
@ Absolute error = 4.5000000000e-1, Relative error = 3.5856573705e-2
----------------
##6 <== Apr09 $ 524.00
==>
----------------
##8 <== Jun09 $ 230.00
==>
----------------
##10 <== Aug09 $ 67.65
==>
----------------
##12 <== Oct09 $ 201.45
==>
----------------
##14 <== Dec09 $ 200.27
##8 ==> Jan10 $ 200.00
##14 #:1 <== Dec09
##8 #:1 ==> Jan10
@ @@
##14 #:3 <== 200.27
##8 #:3 ==> 200.00
@ Absolute error = 2.7000000000e-1, Relative error = 1.3500000000e-3
----------------
<==
##10 ==>
----------------
##16 <== Total $ 2961.60
##11 ==> Total $ 1088.35
##16 #:3 <== 2961.60
##11 #:3 ==> 1088.35
@ Absolute error = 1.8732500000e+3, Relative error = 1.7211834428e+0
+++ File "bill1" differs from file "bill2"
Looking at the displayed report we see that:
##3 <== Jan09 $ 233.56 ##2 ==> Jan09 $ 234.00
Analogously,
##5 <== Mar09 $ 12.55 ##3 ==> Mar09 $ 13.00
says that the line for March is the fifth one in bill1 and the third one in bill2.
If you compare bill1 and bill2 without using the option -z @, the result is completely misleading. This is the output of ‘numdiff -V bill1 bill2’:
----------------
##2 <== -------------------------
##2 ==> Jan09 $ 234.00
##2 #:1 <== -------------------------
##2 #:1 ==> Jan09
@ @@
##2 <==
##2 #>2 ==> $ 234.00
@ Line 2 in file "bill1" is shorter than expected!
----------------
##3 <== Jan09 $ 233.56
##3 ==> Mar09 $ 13.00
##3 #:1 <== Jan09
##3 #:1 ==> Mar09
@ @@
##3 #:3 <== 233.56
##3 #:3 ==> 13.00
@ Absolute error = 2.2056000000e+2, Relative error = 1.6966153846e+1
----------------
##4 <== Feb09 $ 850.77
##4 ==> May09 $ 78.25
##4 #:1 <== Feb09
##4 #:1 ==> May09
@ @@
##4 #:3 <== 850.77
##4 #:3 ==> 78.25
@ Absolute error = 7.7252000000e+2, Relative error = 9.8724600639e+0
----------------
##5 <== Mar09 $ 12.55
##5 ==> Jul09 $ 443.10
##5 #:1 <== Mar09
##5 #:1 ==> Jul09
@ @@
##5 #:3 <== 12.55
##5 #:3 ==> 443.10
@ Absolute error = 4.3055000000e+2, Relative error = 3.4306772908e+1
----------------
##6 <== Apr09 $ 524.00
##6 ==> Sep09 $ 10.00
##6 #:1 <== Apr09
##6 #:1 ==> Sep09
@ @@
##6 #:3 <== 524.00
##6 #:3 ==> 10.00
@ Absolute error = 5.1400000000e+2, Relative error = 5.1400000000e+1
----------------
##7 <== May09 $ 78.25
##7 ==> Nov09 $ 110.00
##7 #:1 <== May09
##7 #:1 ==> Nov09
@ @@
##7 #:3 <== 78.25
##7 #:3 ==> 110.00
@ Absolute error = 3.1750000000e+1, Relative error = 4.0575079872e-1
----------------
##8 <== Jun09 $ 230.00
##8 ==> Jan10 $ 200.00
##8 #:1 <== Jun09
##8 #:1 ==> Jan10
@ @@
##8 #:3 <== 230.00
##8 #:3 ==> 200.00
@ Absolute error = 3.0000000000e+1, Relative error = 1.5000000000e-1
----------------
##9 <== Jul09 $ 443.10
##9 ==> -------------------------
##9 #:1 <== Jul09
##9 #:1 ==> -------------------------
@ @@
##9 #>2 <== $ 443.10
##9 ==>
@ Line 9 in file "bill2" is shorter than expected!
----------------
##10 <== Aug09 $ 67.65
##10 ==>
##10 #>1 <== Aug09 $ 67.65
##10 ==>
@ Line 10 in file "bill2" is shorter than expected!
----------------
##11 <== Sep09 $ 10.00
##11 ==> Total $ 1088.35
##11 #:1 <== Sep09
##11 #:1 ==> Total
@ @@
##11 #:3 <== 10.00
##11 #:3 ==> 1088.35
@ Absolute error = 1.0783500000e+3, Relative error = 1.0783500000e+2
----------------
##12 <== Oct09 $ 201.45
==>
*** End of file "bill2" reached while trying to read line 12.
File "bill1" has more lines than file "bill2",
line 12 is the last one read from file "bill1"
+++ File "bill1" differs from file "bill2"
Numdiff compares now the first, second, third line of bill1 with the first, second, third line of bill2, and so on. But probably this is not what you want in such a case: what is reasonable here is to compare entries related to the same month and not lines having the same location, i.e. the same line number.
Numdiff offers also an option to run just the filter and see how it resynchronizes the two given files without performing any comparison of corresponding lines. The output of ‘numdiff -z @ -f bill1 bill2’ is
Month Expenses Month Expenses
------------------------- <
Jan09 $ 233.56 Jan09 $ 234.00
Feb09 $ 850.77 <
Mar09 $ 12.55 Mar09 $ 13.00
Apr09 $ 524.00 <
May09 $ 78.25 May09 $ 78.25
Jun09 $ 230.00 <
Jul09 $ 443.10 Jul09 $ 443.10
Aug09 $ 67.65 <
Sep09 $ 10.00 Sep09 $ 10.00
Oct09 $ 201.45 <
Nov09 $ 110.00 Nov09 $ 110.00
Dec09 $ 200.27 | Jan10 $ 200.00
------------------------- -------------------------
>
Total $ 2961.60 Total $ 1088.35
+++ File "bill1" differs from file "bill2"
and shows that the filter is doing its job in the right way, associating the lines according to the month and not to the line number. Running just the filter is extremely useful in all situations when you are not sure if the filter is working as you wish. You have indeed to instruct the filter in the right way to let it work correctly, and this requires the use of different options depending on the structure of the files to compare. Since guessing the right options can be sometimes tricky, running just the filter and see the result is the best way to be certain that you are setting up everything correctly. Later, see Filtering, I will explain in detail
By the way, it is even possible to use -f without any other additional option for the filter, like in ‘numdiff -f bill1 bill2’, but the result is more or less the same you would obtain by performing a byte-by-byte comparison with removal of the field delimiters.
The option -f can be followed by an argument in the form of an integer number whose meaning will be explained later, see Use of the option -f.
Even if the output of numdiff is supposed to be self-explanatory,
in the next section I will explain in details all you should know about it.
| • Output format: | How numdiff prints its reports on stdout | |
| • Overview mode: | An alternative way to print listings of differences | |
| • Filter output: | How the built-in filter prints its report | |
| • Raw output: | A compact output format suitable for automated parsing |
Next: Overview mode, Up: Overview [Contents][Index]
Let us go back to our first example. If the files list1 and list2 contain the data
accident 123 23Joshua 34.55 +3+4i water dog -3455.321 cat 2.345678e-9 .0005-6.23e2i
and
Accident 123 23456 34.5500 +3.0001+4i dog -3455.320098 Cat +2.345678e-9 -6.23e2i $$$ A new line
respectively, then the output of the command ‘numdiff list1 list2’ will be:
----------------
##1 #:1 <== accident
##1 #:1 ==> Accident
@ @@
##1 #:3 <== 23Joshua
##1 #:3 ==> 23456
@ @@
##1 #:5 <== +3+4i
##1 #:5 ==> +3.0001+4i
@ Absolute error = 1.0000000000e-4, Relative error = 2.0000000000e-5
##1 #>6 <== water
##1 ==>
@ Line 1 in file "list2" is shorter than expected!
----------------
##2 #:2 <== -3455.321
##2 #:2 ==> -3455.320098
@ Absolute error = 9.0200000000e-4, Relative error = 2.6104672633e-7
##2 #:3 <== cat
##2 #:3 ==> Cat
@ @@
##2 #:5 <== .0005-6.23e2i
##2 #:5 ==> -6.23e2i
@ Absolute error = 5.0000000000e-4, Relative error = 8.0256821830e-7
##2 <==
##2 #>6 ==> $$$
@ Line 2 in file "list1" is shorter than expected!
----------------
##3 <==
##3 #>1 ==> A new line
@ Line 3 in file "list1" is shorter than expected!
----------------
<==
##4 ==>
+++ File "list1" differs from file "list2"
numdiff prints a report on the standard output
for every field of the first file which
differs from the corresponding field of the second file.
This report indicates first the locations
of the fields, namely the numbers
of the lines where the fields appear and
their positions within the line. The position in the line
is “1” for the first field of a line, “2”
for the second field, “3” for the third one, and so on: fields
are numerated starting from the left hand of the line
and proceeding towards the right hand.
For each report the line number is introduced by the symbol “##”,
while the field number by “#:”.
Then numdiff shows in what the difference consists.
For example,
##1 #:1 <== accident ##1 #:1 ==> Accident @ @@
means that the first field of the first line is “accident” in the first file, while in the second file it appears as “Accident”. This difference could be then canceled by removing “accident” from the first file and inserting “Accident” in place of it. The arrows “<==” and “==>” try to visualize this idea. Analogously,
##2 #:2 <== -3455.321 ##2 #:2 ==> -3455.320098 @ Absolute error = 9.0200000000e-4, Relative error = 2.6104672633e-7
means that the second field of the second line
is “-3455.321” in the first file and
“-3455.320098” in the second one.
Since the contents of the field are numerical
in both files, numdiff also prints
the absolute and relative errors.
The absolute error (or absolute difference) is given by the absolute value of the difference between the values appearing in the two files.
The relative error (or relative difference) is actually defined in a more complicated way. If n1 is the value appearing in the first file and n2 is the value in the second file, then the absolute error is given by the formula A=|n1-n2|, while the relative error R is given by:
With these definitions of absolute and relative error it turns out that A(n2, n1) = A(n1, n2) and R(n2, n1) = R(n1, n2). In other words, the absolute/relative error does not change if you only change the order of the compared values. Since version 5 it is actually possible to let Numdiff compute the relative error always with respect to the value from the first file or always with respect to the value from the second file, instead of using the preceding formula. This can be done through the option -F, see Alternative formulas for the computation of the relative difference.
If at least one of the compared fields is not numerical, then the output line reporting absolute and relative errors is replaced by the separator:
@ @@
It can happen that a line in one of the two files to compare contains
more fields than the corresponding line of the other file.
If this is the case, numdiff reports this difference
by telling that a certain line (identified by its
line number) appears to be shorter than expected,
just as in
##1 #>6 <== water ##1 ==> @ Line 1 in file "list2" is shorter than expected!
or in
##3 <== ##3 #>1 ==> A new line @ Line 3 in file "list1" is shorter than expected!
In addition, numdiff shows
the tail of the longer line, using the notation “#>n”
to indicate the number n of the first field of the longer line
for which there is no corresponding field in the shorter line.
For example,
##1 #>6 <== water ##1 ==> @ Line 1 in file "list2" is shorter than expected!
means that none of the fields of the first line starting from the sixth one has a corresponding field in the second file (list2). In this context, the symbol <<*>> (if it appears) is used to denote the End-Of-File, i.e. a line or the tail of a line which is located at the end of the corresponding file and does not have a terminating newline character.
It can also happen that one of the two
files to compare has less lines than the other one.
In this case, if no special option is passed to the program,
numdiff prints the number of the first
line which appears in only one of the two files and
a message on the standard error telling in which of the two files
the end has been prematurely reached:
*** End of file "list1" reached while trying to read line 4.
File "list2" has more lines than file "list1",
line 4 is the last one read from file "list2"
Unless the option -q is used (see Invoking numdiff),
numdiff prints to the standard output
a message reporting the final status of the comparison.
This message says either the two files are equal
or they are different, just as in the example we are
considering:
+++ File "list1" differs from file "list2"
Next: Filter output, Previous: Output format, Up: Overview [Contents][Index]
Since version 5.6 an alternative way to display the differences
between two files is available, which can be activated
through the option -O.
If this option is present on the command line, numdiff
prints a side-by-side report instead of the usual one.
For example, if sheet1 contains the text
A 1 1 B 2 4 C 3 9 D 4 16 E 5 25 F 6 36 G 7 49 H 8 64 I 9 81 J 10 100
and sheet2 the following lines
A 1 1 B 2 4 C 3.3 9.03 D 4 16 E 5.5 25.05 F 6.6 36 G 7.7 49.49 H 8 64 I 9.9 81.09
then ‘numdiff -O sheet1 sheet2’ prints this report
A 1 1 A 1 1
B 2 4 B 2 4
C 3 9 :!:C 3.3 9.03
D 4 16 D 4 16
E 5 25 :!:E 5.5 25.05
F 6 36 :!:F 6.6 36
G 7 49 :!:G 7.7 49.49
H 8 64 H 8 64
I 9 81 :!:I 9.9 81.09
J 10 100 :<:
*** End of file "sheet2" reached while trying to read line 10.
File "sheet1" has more lines than file "sheet2",
line 10 is the last one read from file "sheet1"
+++ File "sheet1" differs from file "sheet2"
On the left side you can see the lines coming from the file specified as first on the command line, i.e. sheet1, on the right side the lines from the second file of the command line, in this case sheet2. In the middle there is a gutter which contains one of these markers:
The corresponding lines are in common. That is, either the lines are identical, or the difference is ignored because of one of the options -s, -D, -I, -X, -a, -r, -P, or -N.
The corresponding lines have at least one field which differs.
The files differ and only the first file contains the line.
The files differ and only the second file contains the line.
In the case of sheet1 and sheet2 a message is printed after the report saying that the end of the second file has been prematurely reached. The two files do not have indeed the same number of lines and the filter has not been activated.
The option -O can take an optional argument, which allows to set the width of the output and eventually to suppress common lines, see Invoking numdiff. The default value for the width of the side-by-side report is 130. No wonder then that the command ‘numdiff -O40 sheet1 sheet2’ displays a report with shorter lines:
A 1 1 A 1 1
B 2 4 B 2 4
C 3 9 :!: C 3.3 9.03
D 4 16 D 4 16
E 5 25 :!: E 5.5 25.05
F 6 36 :!: F 6.6 36
G 7 49 :!: G 7.7 49.49
H 8 64 H 8 64
I 9 81 :!: I 9.9 81.09
J 10 100 :<:
*** End of file "sheet2" reached while trying to read line 10.
File "sheet1" has more lines than file "sheet2",
line 10 is the last one read from file "sheet1"
+++ File "sheet1" differs from file "sheet2"
A negative argument makes that only the differences are listed in the side-by-side report, as shown by the output of the command ‘numdiff -O40 sheet1 sheet2’:
C 3 9 :!: C 3.3 9.03
E 5 25 :!: E 5.5 25.05
F 6 36 :!: F 6.6 36
G 7 49 :!: G 7.7 49.49
I 9 81 :!: I 9.9 81.09
J 10 100 :<:
*** End of file "sheet2" reached while trying to read line 10.
File "sheet1" has more lines than file "sheet2",
line 10 is the last one read from file "sheet1"
+++ File "sheet1" differs from file "sheet2"
If you set the width of the report to a too small value, it can happen that some or even all lines from the compared files appear truncated as in the output of ‘numdiff -O24 sheet1 sheet2’:
A 1 A 1
B 2 B 2
C 3 :!: C 3.3
D 4 D 4
E 5 :!: E 5.5
F 6 :!: F 6.6
G 7 :!: G 7.7
H 8 H 8
I 9 :!: I 9.9
J 10 :<:
*** End of file "sheet2" reached while trying to read line 10.
File "sheet1" has more lines than file "sheet2",
line 10 is the last one read from file "sheet1"
+++ File "sheet1" differs from file "sheet2"
If you set the width of the report to a very small value, Numdiff ignores it and uses the default value, i.e. 130.
Notice that the numeric argument must immediately follow the option -O, intermediate spaces are not allowed. This is also the case for the optional argument of -f, while the options of Numdiff which require a mandatory argument permit the presence of intermediate spaces between them and the argument.
The option -O can be used together with any other option of Numdiff except for -f, -q, -U, -E, -V and -b. When -O is in use, -U, -E, -V and -b are ignored. If -q is present on the command line together with -O, then -O is ignored. Finally, if both -f and -O are present, then the behavior depends on the order: the option which appears first on the command line is the one which matters.
Therefore, the command ‘numdiff -O40 -f sheet1 sheet2’ displays the same report as ‘numdiff -O40 sheet1 sheet2’, while the output of ‘numdiff -f -O40 sheet1 sheet2’ is given by
A 1 1 A 1 1 B 2 4 B 2 4 C 3 9 | C 3.3 9.03 D 4 16 D 4 16 E 5 25 | E 5.5 25.05 F 6 36 | F 6.6 36 G 7 49 | G 7.7 49.49 H 8 64 H 8 64 I 9 81 | I 9.9 81.09 J 10 100 < +++ File "sheet1" differs from file "sheet2"
and coincides then with the output of ‘numdiff -f sheet1 sheet2’.
The option -O can be used together with the filter to cope with the addition/deletion of lines. If the file sheet3 contains the text
A 1 1 C 3.3 9.03 E 5.5 25.05 G 7.7 49.49 I 9.9 81.09 J 10 100.00 K 0 0.02
then ‘numdiff -O40 sheet1 sheet3’ prints a wrong report, as in the example with files bill1 and bill2:
A 1 1 A 1 1
B 2 4 :!: C 3.3 9.03
C 3 9 :!: E 5.5 25.05
D 4 16 :!: G 7.7 49.49
E 5 25 :!: I 9.9 81.09
F 6 36 :!: J 10 100.00
G 7 49 :!: K 0 0.02
H 8 64 :<:
*** End of file "sheet3" reached while trying to read line 8.
File "sheet1" has more lines than file "sheet3",
line 8 is the last one read from file "sheet1"
+++ File "sheet1" differs from file "sheet3"
On the other hand, the presence of -z @ makes Numdiff always compare fields of corresponding lines, as shown by the output of the command ‘numdiff -O40 -z @ sheet1 sheet3’:
A 1 1 A 1 1
B 2 4 :<:
C 3 9 :!: C 3.3 9.03
D 4 16 :<:
E 5 25 :!: E 5.5 25.05
F 6 36 :<:
G 7 49 :!: G 7.7 49.49
H 8 64 :<:
I 9 81 :!: I 9.9 81.09
J 10 100 J 10 100.00
:>: K 0 0.02
+++ File "sheet1" differs from file "sheet3"
Side-by-side format is easy to read, but it has limitations. It generates much wider output than usual, and truncates lines that are too long to fit. Also, it relies on lining up output quite heavily, so its output looks particularly bad if you use varying width fonts, nonstandard tab stops, or nonprinting characters.
Next: Raw output, Previous: Overview mode, Up: Overview [Contents][Index]
The output produced just by running the filter (option -f) is a side-by-side difference listing of the compared files like the one displayed by GNU sdiff. The files are listed in two columns with a gutter between them. The gutter contains one of the following markers:
The corresponding lines are in common. That is, either the lines are identical, or the difference is ignored because of one of the options -s, -D, -I, -X, -z, or -Z.
The corresponding lines differ, and they are either both complete or both incomplete.
The files differ and only the first file contains the line.
The files differ and only the second file contains the line.
The corresponding lines differ, and only the first line is incomplete.
The corresponding lines differ, and only the second line is incomplete.
An input line is incomplete if its last character is not a newline. This can happen only if the line is the last one of its file. When an output line of the side by side difference listing represents two differing lines, one might be incomplete while the other is not. In this case the gutter is marked ‘\’ if the line from the first file is incomplete, ‘/’ if the line from the second file is it.
Like -O, the option -f can take an optional argument which allows to set the width of the output and eventually to suppress common lines, see Invoking numdiff and Use of the option -f.
More generally, the user can always make numdiff
avoid to print, partially or totally, the messages
that it would otherwise send to standard output.
This can be achieved by some suitable command
line options, see Invoking numdiff.
Previous: Filter output, Up: Overview [Contents][Index]
Since version 5.9 Numdiff can report the results of the comparison of two files in a particularly compact format, which can be easily parsed by other programs. This raw format is chosen by Numdiff whenever the user requests it through the command line option --raw. Below you can see an example of raw output in the case of the comparison of the files list1 and list2 from section Output format:
1:1:1:1:*:*:accident ==> Accident 1:1:3:3:*:*:23Joshua ==> 23456 1:1:5:5:1.0000000000e-4:2.0000000000e-5:+3+4i ==> +3.0001+4i 1:1:6:*:water 2:2:2:2:9.0200000000e-4:2.6104672633e-7:-3455.321 ==> -3455.320098 2:2:3:3:*:*:cat ==> Cat 2:2:5:5:5.0000000000e-4:8.0256821830e-7:.0005-6.23e2i ==> -6.23e2i 2:2:*:6:$$$ 3:3:*:1:A new line *:4 +++ File "list1" differs from file "list2"
The raw format is not at all convenient for humans. It has been provided only for being used by the forthcoming graphic user interface of Numdiff (yes, Numdiff will have a GUI sometime in the future!).
Next: Invoking numdiff, Previous: Overview, Up: Top [Contents][Index]
To successfully compile, build and install Numdiff some tools are required. The first one is an ANSI C compiler. This compiler should at least accept the option -o to write its output to a specified file, the option -D for macros predefinition, the option -l to search for a specified library, and the options -I and -L to add a given directory to the search path for include and library files respectively.
In addition, you need a POSIX implementation of the make utility
(I used both GNU make and smake by Joerg Schilling
to compile Numdiff) and a POSIX implementation
of the commands rm and find.
At last, you need a proper installation of GNU Texinfo
(in order to install the info documentation) and
a shell sh-compatible.
Numdiff has been successfully compiled and tested on:
Configuration, building and installation of Numdiff can be performed through the standard three steps:
./configure
make
make install
If you leave enabled the Natural Language Support and you also want to install the localization files (at the moment only the Italian localization is supplied), then after ‘make’ you will have to type and run
make install-nls
By default, ‘make install’ will install all the files in
/usr/local/bin, /usr/local/info etc. You can specify
an installation prefix other than /usr/local using the
option --prefix in the configure step,
for instance ‘--prefix=$HOME’:
./configure --prefix=$HOME
For better control, you can use the options --bindir, --infodir, and so on. Type ‘./configure --help’ to obtain the complete list of all available options.
The documentation files (including a full User Manual
available in HTML, PDF and plain ASCII text format)
will always be put in DOCDIR/numdiff,
where DOCDIR is the path specified by the option --docdir
or, if this option has not been given to
configure, PREFIX/local/doc.
Here PREFIX is the installation prefix specified by the
option --prefix or the default /usr/local.
Once Numdiff has been installed you can remove all files related to Numdiff by a simple ‘make uninstall’. If you have also installed the localization files trough ‘make install-nls’, use ‘make uninstall-nls’ in place of ‘make uninstall’ to remove them too.
Between the options accepted by configure
there are --enable-debug, --enable-optimization,
--enable-nls and --enable-gmp.
The option --enable-debug turns on debugging when
compiling the source code. This is obtained by passing to the
compiler the -g option, but you can change this default
debugging flag (which could not even be recognized by your compiler)
by setting the environment variable DBGFLAGS before
launching configure.
The option --enable-optimization turns on basic optimization when
compiling the source code. This is obtained by passing to the
compiler the -O option, but you can change this default
flag (which could not even be recognized by your compiler)
by setting the environment variable OPTFLAGS before
launching configure.
The option --enable-nls turns on Natural Language Support. You do not need to use it explicitly since Natural Language Support is enabled by default. To disable it, use --disable-nls. Disabling Natural Language Support is suggested whenever you want to install Numdiff on a system where the GNU gettext library is not present. In this case the installation of Numdiff can be accomplished, for example, through
./configure --disable-nls
make
make install
Since version 5.2.0 Numdiff uses to perform all computations the GNU Multiple Precision Arithmetic Library (also called GNU MP or GMP), if this library is available at build-time. The old internal support for multiple precision arithmetic is a fall-back in case GNU MP is absent. However, it is possible to use the internal support for multiple precision arithmetic even if GNU MP is available: it is sufficient to pass the option --enable-gmp=no or --disable-gmp to the configure script before building the program, like in
./configure --disable-gmp
make
make install
Enabling the old internal support for multiple precision arithmetic is deprecated, see with GNU MP is better. The latest version of GNU MP is available at http://ftp.gnu.org/gnu/gmp/. See the GNU MP web page at http://gmplib.org/ for up-to-date information on GNU MP.
Next: ndselect, Previous: Installing, Up: Top [Contents][Index]
SYNOPSIS
numdiff -h|--help|-v|--version
or
numdiff [-s IFS][-D DELIMS][-a THRVAL[:RANGE|:RANGE1:RANGE2]] [-r THRVAL[:RANGE|:RANGE1:RANGE2]][-2][-F NUM][-# NUM][-P][-N][-I] [-c CURRNAME][-d C1C2][-t C1C2][-g N1N2][-p C1C2][-n C1C2][-e C1C2] [-i C1C2][-X 1:RANGE][-X 2:RANGE][-E][-U][-b][-V][-O[NUM]][--raw][-q][-S] [-z 1:RANGE][-z 2:RANGE][-Z 1:RANGE][-Z 2:RANGE][-m][-H][-f[NUM]] [-T][-B][-l PATH][-o PATH] FILE1 FILE2
where FILE1 and FILE2 are the names of the two files to compare and RANGE, RANGE1 and RANGE2 stay for a positive integer value or for a range of integer values, like ‘1-’, ‘3-5’ or ‘-7’.
In the first case numdiff prints a short help
(not so short actually :)) or/and version number, Copyright, License notice,
NO-Warranty disclaimer, and some information about the way it was built.
In the second case numdiff compares the files specified by
the two mandatory arguments which follow the list of the options.
The complete paths of the files should be given,
a directory name is not accepted.
In addition, the two arguments cannot refer to the same file
but one of them can be -, which refers to stdin.
OPTIONS
Specify the set of characters to use as delimiters while splitting the input lines into fields (The default set of delimiters is space, tab and newline). If IFS is prefixed with ‘1:’ or ‘2:’, use the given delimiter set only for the lines from the first or the second file respectively
Specify the set of strings to use as delimiters while splitting the input lines into fields (The default set of delimiters is space, tab and newline). If DELIMS is prefixed with ‘1:’ or ‘2:’, use the given delimiter set only for the lines from the first or the second file respectively
Set to THRVAL the maximum absolute difference permitted before two numeric fields are regarded as different (The default value is zero). If a RANGE is given, use the specified threshold only when comparing fields whose indexes lie in RANGE. If both RANGE1 and RANGE2 are given and have the same length, then use the specified threshold when comparing a field of FILE1 lying in RANGE1 with the corresponding field of FILE2 in RANGE2
Set to THRVAL the maximum relative difference permitted before two numeric fields are regarded as different (The default value is zero). If a RANGE is given, use the specified threshold only when comparing fields whose indexes lie in RANGE. If both RANGE1 and RANGE2 are given and have the same length, then use the specified threshold when comparing a field of FILE1 lying in RANGE1 with the corresponding field of FILE2 in RANGE2
Consider two numerical values as equal only if both absolute and relative difference do not exceed the respective tolerance threshold
Use the formula indicated by NUM to compute the relative errors. If NUM is 0 use the classic formula. If NUM is 1 compute the relative errors by considering the values in FILE1 as sample values. If NUM is 2 compute the relative errors by considering the values in FILE2 as sample values.
Set to NUM the number of digits in the significands used in multiple precision arithmetic
Ignore all differences due to numeric fields of the second file that are less than the corresponding numeric fields in the first file
Ignore all differences due to numeric fields of the second file that are greater than the corresponding numeric fields in the first file
Ignore changes in case while doing literal comparisons
Set to CURRNAME the currency name for the two files to compare. CURRNAME must be prefixed with ‘1:’ or ‘2:’ to specify the currency name only for the first or the second file
Specify the characters representing the decimal point in the two files to compare
Specify the characters representing the thousands separator in the two files to compare
Specify the number of digits forming each group of thousands in the two files to compare
Specify the (optional) prefixes for positive values used in the two files to compare
Specify the prefixes for negative values used in the two files to compare
Specify the exponent letters used in the two files to compare
Specify the characters representing the imaginary unit in the two files to compare
Select the fields of the first file that have to be ignored
Select the fields of the second file that have to be ignored
While printing the differences between the two compared files show only the numerical ones
While printing the differences between the two compared files neglect all the numerical ones (dummy mode)
Suppress all messages concerning the differences discovered in the structures of the two files
For every couple of lines which differ in at least one field print an header to show how these lines appear in the two compared files
Display a side by side difference listing of the two files showing which lines are present only in one file, which lines are present in both files but with one or more differing fields, and which lines are identical. If NUM is zero or is not specified, output at most 130 columns per line. If NUM is a positive number, output at most NUM columns per line. If NUM is a negative number, do not output common lines and display at most -NUM columns per line.
Display the differences between the two compared files in raw format (not very convenient for humans)
Suppress all the standard output
Add some statistics to the standard output
Select the fields of the first file that have to be blurred during the synchronization procedure only if they turn out to be numeric
Select the fields of the second file that have to be blurred during the synchronization procedure only if they turn out to be numeric
Select the fields of the first file that have to be unconditionally blurred during the synchronization procedure
Select the fields of the second file that have to be unconditionally blurred during the synchronization procedure
During synchronization try hard to find a smaller set of changes
During synchronization assume large files and many scattered small changes
Run only the filter and then show the results of its attempt to synchronize the two files. If NUM is zero or is not specified, output at most 130 columns per line. If NUM is a positive number, output at most NUM columns per line. If NUM is a negative number, do not output common lines and display at most -NUM columns per line.
Expand tabs to spaces in output while displaying the results of the synchronization procedure (meaningful only together with option -O or -f)
Treat both files as binary files (only meaningful under Doz/Windoz)
Redirect warning and error messages from stderr to the indicated file
Redirect output from stdout to the indicated file
Show help message and predefined settings
Show version number, Copyright, Distribution Terms and NO-Warranty
DIAGNOSTICS
The exit status is 1 if the two given files differ, 0 if they are equal, -1 (255) in case of error.
DEFAULT NUMERIC FORMAT (for both files to compare):
Currency name = ""
Decimal point = ‘.’
Thousands separator = ‘,’
Number of digits in each thousands group = 3
Leading positive sign = ‘+’
Leading negative sign = ‘-’
Prefix for decimal exponent = ‘e’
Symbol used to denote the imaginary unit = ‘i’
SOME EXPLANATIONS
The options -U, -E, -b, and -q are used to hide part of the standard output of the program according to certain rules.
The option -U triggers the dummy mode. In this mode
numdiff does not print the numerical differences. A numerical
difference occurs whenever the compared fields turn out to be both of numerical
type, but the field from the second file has a value
which differs from the one of the field from the first file.
The dummy mode is so called since in this mode
numdiff does not perform the job for which I created it.
The option -E triggers the essential mode. In this mode
numdiff only prints the numerical differences between the
files and, if there are some, the differences in the
structure. The latter ones occur either when one of
the files contains a line for which there is no
corresponding line in the other file, or
when the comparison of corresponding lines shows
that one of them contains a field for which there exists no
corresponding field in the other line.
If you are not running any filter or cutting out any
fields through the option -X, then
the differences in the structure simply consist either
in a different number of lines in the
two files, or in a different number of fields on a line.
The option -b triggers the brief mode. In this mode
numdiff does not print the differences in
the structure of the two files (see above for an explanation
about what differences in the structure are).
The option -q triggers the quiet mode.
In this mode numdiff does not print anything on the
standard output. The quiet mode is useful if you only want
to know whether a couple of files are equal or not.
This information can be obtained by looking at the exit status
of the program.
The option -O activates the overview mode,
which makes numdiff print a side-by-side report
in the form described in section Overview mode.
The optional numeric argument after -O must immediately
follow, intermediate spaces are not allowed.
The option -O can be used together with any other option
of Numdiff except for -f, -q, -U, -E,
-V, -b, and --raw.
Whenever -O is in use, -U, -E,
-V and -b are ignored.
If --raw or -q is present on the command line together
with -O, then -O is ignored.
Finally, if both -f and -O are
present, the behavior of Numdiff will depend on their order:
the option which appears first on the command line is the
one which matters.
The option -V triggers the verbose mode. In this
mode numdiff produces a richer report by printing an header
whenever the compared lines differ. The header shows
how and where these lines appear in the compared files.
For instance, if the files data1 and data2 contain the data
12 33 22 44.5 0.008 1.002 221.12 -34.56 water 2101.21 boats
and
12 33 22.3 44.5 0.008 1.202 221.12 -34.56 2101.21 boats dogs
respectively, then the command ‘numdiff -V data1 data2’ will print the following output:
---------------- ##2 <== 22 44.5 ##2 ==> 22.3 44.5 ##2 #:1 <== 22 ##2 #:1 ==> 22.3 @ Absolute error = 3.0000000000e-1, Relative error = 1.3636363636e-2 ---------------- ##3 <== 0.008 1.002 ##3 ==> 0.008 1.202 ##3 #:2 <== 1.002 ##3 #:2 ==> 1.202 @ Absolute error = 2.0000000000e-1, Relative error = 1.9960079840e-1 ---------------- ##4 <== 221.12 -34.56 water ##4 ==> 221.12 -34.56 ##4 #>3 <== water ##4 ==> @ Line 4 in file "data2" is shorter than expected! ---------------- ##5 <== 2101.21 boats ##5 ==> 2101.21 boats dogs ##5 <== ##5 #>3 ==> dogs @ Line 5 in file "data1" is shorter than expected! +++ File "data1" differs from file "data2"
Mind that the options -b and -V will be overridden if -q is also set.
The amount of additional information printed by -V is
trivially influenced by the options that alter
the way numdiff performs the comparisons between fields
(for instance -a, -r, -2, -N,
-P, -U, -E, -I, -X).
In the headers printed by numdiff in “verbose mode”
the symbol <<*>> can appear. This symbol, if present,
is always located at the end of a line to mean that the line
is at the end of the corresponding file and
does not have a terminating newline character.
The option -S adds to the standard output of numdiff
a statistical report with the following information:
The information printed by -S is not removed if this option is used together with -q, and is not influenced by the option --raw.
The options -a, -r, -2,
-P and -N affect the way numdiff
performs the comparisons between numerical values.
Without any of these options, numdiff considers two
numerical fields as equal if their difference is zero.
The option -a can be used to make two numerical fields be considered equal as long as their absolute difference does not exceed a certain threshold, which is specified by the argument that follows the -a option. This argument can take several forms. The basic form consists of a single numerical value, the extended form adds the specification of one or two ranges of integer values.
Independently of the form of the argument, if the absolute
difference between two fields does not exceed the given threshold value,
the fields are considered equal;
otherwise, numdiff prints the difference in its report,
unless some other option, for example -P or -N,
makes the difference be neglected.
If nothing else follows the threshold value, the rule just explained applies
to all comparisons between numerical fields.
To see this in practice, if the file
many_columns1 contains the text
A 1 1.2 1 0.1 11.0 1.0e-1 B 2 2.4 4 0.4 24.0 1.0e-2 C 3 3.6 9 0.9 39.0 1.0e-3 D 4 4.8 16 1.6 416.0 1.0e-4
and the contents of the file many_columns2 are given by
A 1.1 1.08 1.01 0.1 11.011 -1.0e-1 B 2.2 2.16 4.04 0.4 24.024 -1.0e-2 C 3.3 3.24 9.09 0.9 39.039 -1.0e-3 D 4.4 4.32 16.16 1.6 416.039 -1.0e-4
then the output of the command ‘numdiff -a 0.5 many_columns1 many_columns2’ will be
+++ Files "many_columns1" and "many_columns2" are equal
The highest absolute difference between a field from many_columns1 and the corresponding field from many_columns2 is given indeed by |4.32 - 4.8| = |-0.48| = 0.48, and then all numeric differences between the two files remain below the threshold value 0.5.
On the other hand, the command ‘numdiff -a 0.35 many_columns1 many_columns2’ prints the report
---------------- ##3 #:3 <== 3.6 ##3 #:3 ==> 3.24 Absolute error = 3.6000000000e-1, Relative error = 1.1111111111e-1 ---------------- ##4 #:2 <== 4 ##4 #:2 ==> 4.4 Absolute error = 4.0000000000e-1, Relative error = 1.0000000000e-1 ##4 #:3 <== 4.8 ##4 #:3 ==> 4.32 Absolute error = 4.8000000000e-1, Relative error = 1.1111111111e-1 +++ File "many_columns1" differs from file "many_columns2"
since the absolute differences |3.24-3.6| = |-0.36| = 0.36, |4.4-4| = |0.4| = 0.4, and |4.32 - 4.8| = 0.48 exceed the value 0.35, while the other differences are below this threshold.
If you want that the specified threshold value applies
only when comparing some particular fields, you
have to use the extended form for the argument of -a.
This means that after the threshold value one
or two ranges of integer numbers must follow, each
preceded by a colon (‘:’).
If you specify only one range of numbers after
the threshold value, numdiff uses the
given threshold only when comparing fields whose positions lie
in the specified range.
Remember that the positions of the fields on a line
are numbered starting from the left hand of the line
and proceeding towards the right hand.
For example, ‘-a 0.01:2-5’ sets the threshold value
to 0.01 only for the comparisons between numerical fields
which occupy on their lines a position between the second and the fifth one inclusive.
For the other comparisons the threshold value is left unchanged;
in particular, it is equal to zero if it has not been explicitly set.
If the files many_columns1 and many_columns2 are the same as before,
then the command ‘numdiff -a 0.5:3-6 many_columns1 many_columns2’ will
display the following report
---------------- ##1 #:2 <== 1 ##1 #:2 ==> 1.1 Absolute error = 1.0000000000e-1, Relative error = 1.0000000000e-1 ##1 #:7 <== 1.0e-1 ##1 #:7 ==> -1.0e-1 Absolute error = 2.0000000000e-1, Relative error = 2.0000000000e+0 ---------------- ##2 #:2 <== 2 ##2 #:2 ==> 2.2 Absolute error = 2.0000000000e-1, Relative error = 1.0000000000e-1 ##2 #:7 <== 1.0e-2 ##2 #:7 ==> -1.0e-2 Absolute error = 2.0000000000e-2, Relative error = 2.0000000000e+0 ---------------- ##3 #:2 <== 3 ##3 #:2 ==> 3.3 Absolute error = 3.0000000000e-1, Relative error = 1.0000000000e-1 ##3 #:7 <== 1.0e-3 ##3 #:7 ==> -1.0e-3 Absolute error = 2.0000000000e-3, Relative error = 2.0000000000e+0 ---------------- ##4 #:2 <== 4 ##4 #:2 ==> 4.4 Absolute error = 4.0000000000e-1, Relative error = 1.0000000000e-1 ##4 #:7 <== 1.0e-4 ##4 #:7 ==> -1.0e-4 Absolute error = 2.0000000000e-4, Relative error = 2.0000000000e+0 +++ File "many_columns1" differs from file "many_columns2"
since the threshold value 0.5 applies now only when comparing fields in third, fourth, fifth and sixth position, while for the other comparisons the threshold value is the default one, i.e. zero. If you want to specify a non null threshold also for the fields in second and seventh position, you can do it by using the option -a more times. The command ‘numdiff -a 0.5:3-6 -a 0.25:2 -a 4e-3:7 many_columns1 many_columns2’ sets the threshold value to 0.25 for the comparisons between the fields in second position, and to 4e-3 for the comparisons of the fields in seventh position. No wonder then, that the command prints exactly this report:
---------------- ##1 #:7 <== 1.0e-1 ##1 #:7 ==> -1.0e-1 Absolute error = 2.0000000000e-1, Relative error = 2.0000000000e+0 ---------------- ##2 #:7 <== 1.0e-2 ##2 #:7 ==> -1.0e-2 Absolute error = 2.0000000000e-2, Relative error = 2.0000000000e+0 ---------------- ##3 #:2 <== 3 ##3 #:2 ==> 3.3 Absolute error = 3.0000000000e-1, Relative error = 1.0000000000e-1 ---------------- ##4 #:2 <== 4 ##4 #:2 ==> 4.4 Absolute error = 4.0000000000e-1, Relative error = 1.0000000000e-1 +++ File "many_columns1" differs from file "many_columns2"
Observe that :2 and :7 are abbreviations of :2-2 and :7-7, respectively. It is even possible to use range expressions like ‘m-’ or ‘-n’. The first expression means all fields starting from the mth one (inclusive) till to the end of line, the second selects all fields from the first one till to the nth one, both inclusive.
If you specify two ranges of numbers after
the threshold value and they have the same length
(the length of a range is the difference between its maximum and its minimum),
numdiff uses the given threshold when
comparing a field of the first file
lying in the first range with the corresponding field
of the second file from the second range.
For example, ‘-a 1e-4:3-5:4-6’ sets the threshold value
to 0.0001 only for the numerical comparisons of the third,
fourth, and fifth field of each line from the first file
with the fourth, fifth and sixth field respectively
of the corresponding line from the second file.
For the other comparisons the threshold value is left unchanged
and is in particular equal to zero if it has not been
explicitly set. This way to restrict the application of
a threshold value is useful in conjunction with the
option -X, which makes numdiff ignore one
or more fields from one of the compared files.
The file many_columns3:
A I 1.1 1.08 1.01 0.1 11.011 -1.0e-1 B II 2.2 2.16 4.04 0.4 24.024 -1.0e-2 C III 3.3 3.24 9.09 0.9 39.039 -1.0e-3 D IV 4.4 4.32 16.16 1.6 416.039 -1.0e-4
has one column more than the file many_columns1, namely
the second one. When comparing many_columns1 with
many_columns3 it is natural then to ignore the second
column of the second file. This can be achieved by passing
the argument 2:2 to the option -X (for a full
description of the use of this option,
see Restriction of the comparison to particular fields).
Ignoring the second field of each line of many_columns3
implies that the fields in the third column of this file
are compared with the corresponding fields of the second
column of many_columns1, the fields in the fourth column
of many_columns3 are compared with the ones in the third
column of many_columns1, and so on.
Therefore, if you want to set a threshold value only for the
comparisons between some particular fields you have to consider
that ‘-X 2:2’ makes numdiff compare the
first, second, third, fourth, fifth, sixth, and seventh field
of each line of many_columns1 with the first, third, fourth,
fifth, sixth, seventh, and eighth field respectively of
the corresponding line of many_columns3.
Therefore, the command ‘numdiff -X 2:2 -a 0.5:3-6 many_columns1 many_columns3’
will use 0.5 as threshold value only when comparing
the third, fourth, and fifth field of a line from
many_columns1 with the fourth,
fifth, and sixth field respectively of the corresponding line
of many_columns3.
This explains why the report of ‘numdiff -X 2:2 -a 0.5:3-6 many_columns1 many_columns3’
---------------- ##1 #:2 <== 1 ##1 #:3 ==> 1.1 Absolute error = 1.0000000000e-1, Relative error = 1.0000000000e-1 ##1 #:6 <== 11.0 ##1 #:7 ==> 11.011 Absolute error = 1.1000000000e-2, Relative error = 1.0000000000e-3 ##1 #:7 <== 1.0e-1 ##1 #:8 ==> -1.0e-1 Absolute error = 2.0000000000e-1, Relative error = 2.0000000000e+0 ---------------- ##2 #:2 <== 2 ##2 #:3 ==> 2.2 Absolute error = 2.0000000000e-1, Relative error = 1.0000000000e-1 ##2 #:6 <== 24.0 ##2 #:7 ==> 24.024 Absolute error = 2.4000000000e-2, Relative error = 1.0000000000e-3 ##2 #:7 <== 1.0e-2 ##2 #:8 ==> -1.0e-2 Absolute error = 2.0000000000e-2, Relative error = 2.0000000000e+0 ---------------- ##3 #:2 <== 3 ##3 #:3 ==> 3.3 Absolute error = 3.0000000000e-1, Relative error = 1.0000000000e-1 ##3 #:6 <== 39.0 ##3 #:7 ==> 39.039 Absolute error = 3.9000000000e-2, Relative error = 1.0000000000e-3 ##3 #:7 <== 1.0e-3 ##3 #:8 ==> -1.0e-3 Absolute error = 2.0000000000e-3, Relative error = 2.0000000000e+0 ---------------- ##4 #:2 <== 4 ##4 #:3 ==> 4.4 Absolute error = 4.0000000000e-1, Relative error = 1.0000000000e-1 ##4 #:6 <== 416.0 ##4 #:7 ==> 416.039 Absolute error = 3.9000000000e-2, Relative error = 9.3750000000e-5 ##4 #:7 <== 1.0e-4 ##4 #:8 ==> -1.0e-4 Absolute error = 2.0000000000e-4, Relative error = 2.0000000000e+0 +++ File "many_columns1" differs from file "many_columns3"
does not show the same difference listing of the command ‘numdiff -a 0.5:3-6 many_columns1 many_columns2’.
If what you want is to obtain the same difference listing of ‘numdiff -a 0.5:3-6 many_columns1 many_columns2’, then the right command is ‘numdiff -X 2:2 -a 0.5:3-6:4-7 many_columns1 many_columns3’. The report printed by this last command is indeed
---------------- ##1 #:2 <== 1 ##1 #:3 ==> 1.1 Absolute error = 1.0000000000e-1, Relative error = 1.0000000000e-1 ##1 #:7 <== 1.0e-1 ##1 #:8 ==> -1.0e-1 Absolute error = 2.0000000000e-1, Relative error = 2.0000000000e+0 ---------------- ##2 #:2 <== 2 ##2 #:3 ==> 2.2 Absolute error = 2.0000000000e-1, Relative error = 1.0000000000e-1 ##2 #:7 <== 1.0e-2 ##2 #:8 ==> -1.0e-2 Absolute error = 2.0000000000e-2, Relative error = 2.0000000000e+0 ---------------- ##3 #:2 <== 3 ##3 #:3 ==> 3.3 Absolute error = 3.0000000000e-1, Relative error = 1.0000000000e-1 ##3 #:7 <== 1.0e-3 ##3 #:8 ==> -1.0e-3 Absolute error = 2.0000000000e-3, Relative error = 2.0000000000e+0 ---------------- ##4 #:2 <== 4 ##4 #:3 ==> 4.4 Absolute error = 4.0000000000e-1, Relative error = 1.0000000000e-1 ##4 #:7 <== 1.0e-4 ##4 #:8 ==> -1.0e-4 Absolute error = 2.0000000000e-4, Relative error = 2.0000000000e+0 +++ File "many_columns1" differs from file "many_columns3"
and up to the positions of the fields from many_columns3 coincides with the one of ‘numdiff -a 0.5:3-6 many_columns1 many_columns2’.
The option -a can appear more times on the command line. In case of conflicts, the last setting is the one which matters. If you look at the report of the command ‘numdiff -a 0.5:3-6 -a 0.08:4 many_columns1 many_columns2’
---------------- ##1 #:2 <== 1 ##1 #:2 ==> 1.1 Absolute error = 1.0000000000e-1, Relative error = 1.0000000000e-1 ##1 #:7 <== 1.0e-1 ##1 #:7 ==> -1.0e-1 Absolute error = 2.0000000000e-1, Relative error = 2.0000000000e+0 ---------------- ##2 #:2 <== 2 ##2 #:2 ==> 2.2 Absolute error = 2.0000000000e-1, Relative error = 1.0000000000e-1 ##2 #:7 <== 1.0e-2 ##2 #:7 ==> -1.0e-2 Absolute error = 2.0000000000e-2, Relative error = 2.0000000000e+0 ---------------- ##3 #:2 <== 3 ##3 #:2 ==> 3.3 Absolute error = 3.0000000000e-1, Relative error = 1.0000000000e-1 ##3 #:4 <== 9 ##3 #:4 ==> 9.09 Absolute error = 9.0000000000e-2, Relative error = 1.0000000000e-2 ##3 #:7 <== 1.0e-3 ##3 #:7 ==> -1.0e-3 Absolute error = 2.0000000000e-3, Relative error = 2.0000000000e+0 ---------------- ##4 #:2 <== 4 ##4 #:2 ==> 4.4 Absolute error = 4.0000000000e-1, Relative error = 1.0000000000e-1 ##4 #:4 <== 16 ##4 #:4 ==> 16.16 Absolute error = 1.6000000000e-1, Relative error = 1.0000000000e-2 ##4 #:7 <== 1.0e-4 ##4 #:7 ==> -1.0e-4 Absolute error = 2.0000000000e-4, Relative error = 2.0000000000e+0 +++ File "many_columns1" differs from file "many_columns2"
you see that 0.08 and not 0.5 is taken as threshold value for the comparison of the fields in fourth position.
Finally, if -a is not present on the command line,
then the default threshold value of zero applies to all comparisons
of numerical fields and any non null absolute difference
is considered as significant, unless some other option,
for example -P or -N, makes numdiff ignore it.
The option -r can be used to make two numerical fields be considered equal as long as their relative difference does not exceed a certain threshold, which is specified by the argument that follows the -r option. As for the option -a, the argument of -r can have several forms. These forms are the same accepted by -a and have the same meanings, but the threshold value applies to the relative difference, not to the absolute one.
The relative difference is normally defined in this way. If n1 is a value from the file specified as first on the command line and n2 is the corresponding value from the second file, then the absolute difference is given by the formula A=|n1-n2|. The relative difference R is given by:
With this definition of relative difference it turns out that R(n2, n1) = R(n1, n2): the relative difference does not change if you only change the ordering of the compared files on the command line.
There are cases when this default definition of relative error makes no sense. This can happen for instance when one of the files is a sample file containing a list of expected data, which could have been computed theoretically or come from experiments in a laboratory. In this case it is more natural to define the relative difference as the ratio between the absolute difference and the absolute value of the number coming from the sample file. If you use the option -F together with the argument 1 (or 2), then Numdiff always compute the relative difference as the ratio between the absolute difference and the absolute value of the number from the first file (the second file, respectively). More precisely, with ‘-F 1’ the relative difference R is computed according to these rules:
With ‘-F 2’ the rules become:
With the last two sets of rules it is not anymore true that R(n2, n1) = R(n1, n2): the relative difference changes, in the general case, together with the ordering of the files on the command line. As a simple example, suppose that file1 and file2 contain
1 9.9 0.5 440
and
1.2 8 0.51 400
respectively. Then ‘numdiff file1 file2’ displays
---------------- ##1 #:1 <== 1 ##1 #:1 ==> 1.2 Absolute error = 2.0000000000e-1, Relative error = 2.0000000000e-1 ##1 #:2 <== 9.9 ##1 #:2 ==> 8 Absolute error = 1.9000000000e+0, Relative error = 2.3750000000e-1 ##1 #:3 <== 0.5 ##1 #:3 ==> 0.51 Absolute error = 1.0000000000e-2, Relative error = 2.0000000000e-2 ##1 #:4 <== 440 ##1 #:4 ==> 400 Absolute error = 4.0000000000e+1, Relative error = 1.0000000000e-1 +++ File "file1" differs from file "file2"
‘numdiff -F 1 file1 file2’ prints
---------------- ##1 #:1 <== 1 ##1 #:1 ==> 1.2 Absolute error = 2.0000000000e-1, Relative error = 2.0000000000e-1 ##1 #:2 <== 9.9 ##1 #:2 ==> 8 Absolute error = 1.9000000000e+0, Relative error = 1.9191919192e-1 ##1 #:3 <== 0.5 ##1 #:3 ==> 0.51 Absolute error = 1.0000000000e-2, Relative error = 2.0000000000e-2 ##1 #:4 <== 440 ##1 #:4 ==> 400 Absolute error = 4.0000000000e+1, Relative error = 9.0909090909e-2 +++ File "file1" differs from file "file2"
the output of ‘numdiff -F 2 file1 file2’ is
---------------- ##1 #:1 <== 1 ##1 #:1 ==> 1.2 Absolute error = 2.0000000000e-1, Relative error = 1.6666666667e-1 ##1 #:2 <== 9.9 ##1 #:2 ==> 8 Absolute error = 1.9000000000e+0, Relative error = 2.3750000000e-1 ##1 #:3 <== 0.5 ##1 #:3 ==> 0.51 Absolute error = 1.0000000000e-2, Relative error = 1.9607843137e-2 ##1 #:4 <== 440 ##1 #:4 ==> 400 Absolute error = 4.0000000000e+1, Relative error = 1.0000000000e-1 +++ File "file1" differs from file "file2"
‘numdiff -F 1 -r 0.195 file1 file2’ displays
---------------- ##1 #:1 <== 1 ##1 #:1 ==> 1.2 Absolute error = 2.0000000000e-1, Relative error = 2.0000000000e-1 +++ File "file1" differs from file "file2"
and finally, ‘numdiff -F 2 -r 0.195 file1 file2’ displays
---------------- ##1 #:2 <== 9.9 ##1 #:2 ==> 8 Absolute error = 1.9000000000e+0, Relative error = 2.3750000000e-1 +++ File "file1" differs from file "file2"
The option -2 is only meaningful when the user
specifies a non-zero tolerance threshold for both
absolute and relative difference. Without this option
numdiff considers two numerical fields equal
as long as at least one between
absolute and relative difference does not exceed the
corresponding threshold.
With the option -2 numdiff regards two numerical
fields as equal only if both absolute and relative difference do not exceed the
thresholds of tolerance specified for those fields.
For example, if file1 contains the unique line
100
and file2 the line
100.00012
then the output of the command ‘numdiff file1 file2’ will be
----------------
##1 #:1 <== 100
==> 100.00012
@ Absolute error = 1.2000000000e-4, Relative error = 1.2000000000e-6
+++ File "file1" differs from file "file2"
The output of the commands ‘numdiff -a 1.0e-4 file1 file2’ and ‘numdiff -r 1.0e-6 file1 file2’ will be the same as above, but ‘numdiff -a 1.0e-4 -r 1.3e-6 file1 file2’ and ‘numdiff -a 1.3e-4 -r 1.0e-6 file1 file2’ will print the message
+++ Files "file1" and "file2" are equal
since the relative difference is 1.2e-6 < 1.3e-6, the absolute difference is 1.2e-4 < 1.3e-4, and it is sufficient that one of them does not exceed its tolerance threshold.
On the other hand, the commands ‘numdiff -a 1.0e-4 -r 1.3e-6 -2 file1 file2’ and ‘numdiff -a 1.3e-4 -r 1.0e-6 -2 file1 file2’ will both print the message
----------------
##1 #:1 <== 100
==> 100.00012
@ Absolute error = 1.2000000000e-4, Relative error = 1.2000000000e-6
+++ File "file1" differs from file "file2"
since the option -2 makes numdiff regard two values
as equal only if both absolute and relative difference do not exceed
the respective threshold of tolerance.
The option -P makes numdiff consider two values equal
whenever the second one, i.e. the value coming from the file specified as last
on the command line, is less or equal than the first one, which
is the value coming from the file specified as first on the command line.
If the values to compare are complex numbers, saying that
the second one is less or equal than the first one means that
both real and imaginary part of the second value are
not greater than real and imaginary part of the first value, respectively.
Finally, the option -N makes numdiff consider two values equal
whenever the second one, i.e. the value coming from the file specified as last
on the command line, is greater or equal than the first one, which
is the value coming from the file specified as first on the command line.
If the values to compare are complex numbers, saying that
the second one is greater or equal than the first one means that
both real and imaginary part of the second value are
not less than real and imaginary part of the first value, respectively.
The options -B, -I, -l, -o, -h, and -v do not require further explanations. The options -l and -o are only supplied for the users of poorly designed operating systems, whose default shell does not allow the redirection of standard error and standard output. The option -I has no effect on the outcome of numerical comparisons but affects the action of the filter, see Filtering.
The option -s requires as argument a set of characters, which will be taken as field delimiters. It is better to quote the set of the delimiters, just as in the next examples:
numdiff -s ' \t\n,;:.' file1 file2 numdiff -s ' \t\n\r\f\v"\:;' file1 file2 numdiff -s `` \t\n''' file1 file2
If you want to include in the set of delimiters also some special characters, e.g. the blank, then you must quote it. I recommend you to always use the single quote character (') to enclose the list of the delimiters, since in this way you will prevent any substitution or handling of characters by the shell.
numdiff recognizes and interprets
the following sequences of characters within the argument
passed to the option -s:
Thus, by passing the string ‘ \t\n,;:.’ as argument
for the option -s one tells numdiff to use
as field delimiters the characters blank,
horizontal tab, newline, comma,
semicolon, colon, and dot.
Passing ‘ \t\n’ as argument to the option -s
is the same as not using at all the option -s, since
blank, horizontal tab, and newline
are the default field delimiters.
In the list of field delimiters the character backslash (‘\’) is always treated in a special way. If it forms, combined with the subsequent character(s), one of the escape sequences listed above, then it is considered to be an escape character, and the whole escape sequence is decoded as shown above. Otherwise, the backslash is just ignored.
Therefore, the delimiters specified by the command line
numdiff -s' \t\n\\\"' file1 file2
are blank, horizontal tab, newline,
backslash and double quote, since
‘\\’ and ‘\"’ are interpreted by numdiff
as ‘\’ and ‘"’.
Even if I have recommended to enclose the set of
delimiters in single quotes, there are
cases in which you will be forced to use
the double quote character (‘"’) to enclose
the set of field delimiters, e.g. if the single
quote character is used itself as field delimiter, like
in one of the precedent examples.
However, you must take into account that in this case
the shell could make some substitutions on the command line
before executing numdiff.
For instance, if your shell is GNU bash, then (citing the man page of
GNU bash)
Enclosing characters in double quotes preserves the literal value of all characters within the quotes, with the exception of ‘$’, ‘`’, and ‘\’. The characters ‘$’ and ‘`’ retain their special meaning within double quotes. The backslash retains its special meaning only when followed by one of the following characters: ‘$’, ‘`’, ‘"’, ‘\’, or <newline>. A double quote may be quoted within double quotes by preceding it with a backslash ... The special parameters * and @ have special meaning when in double quotes …
Therefore, if the set of delimiters is formed by ‘ ’, ‘\t’,
‘\n’, ‘\’ and ‘"’, and you decide to enclose them
in double quotes, the numdiff command line should be
numdiff -s'' \t\n\\\\\"'' file1 file2
and not
numdiff -s'' \t\n\\\"'' file1 file2
In the latter case the shell would indeed replace the string
‘ \t\n\\\"’
by
‘ \t\n\"’
and then numdiff would take ‘ ’, ‘\t’, ‘\n’
and ‘"’ as field delimiters.
numdiff requires the presence of the newline
in the set of characters passed to -s. The absence
of the newline in the set of delimiters causes the issue
of a warning message and the termination of the program.
If you run Numdiff with the option -B (--binary)
on files created under MSDog/MSWindoze, then you should
put the carriage return in the set of field delimiters.
Otherwise, this character would be included in all the fields
which stay at the end of a line and this would cause some
undesirable effects. For instance, a number put at the
end of a line would not be regarded as a numerical field
by numdiff, since numdiff would consider
the final carriage return as part of the field, and
this one would be then qualified as non-numerical.
You can specify different delimiters for the two files to compare
by putting the prefix ‘1:’ or ‘2:’ in front of the
set of characters passed to -s.
If the argument of -s begins with ‘1:’, the
characters after this prefix are used as field delimiters
only for the file passed as first on the command line.
Analogously, if the prefix is ‘2:’, then the
characters after it are used as field delimiters only
for the file specified as second on the command line.
You can also provide an explicit set of
delimiters for just one of the files to compare,
in which case numdiff uses the default field
delimiters blank, tab and newline
for the other file.
Therefore, with
‘numdiff -s '1:: \n' file1 file2’
the program will take colon, blank
and newline as delimiters for file1,
and blank, tab and
newline as delimiters for file2.
The recommendations about quoting the set of delimiters
are valid also in presence of a prefix.
Starting from version 5.8 numdiff allows to specify
whole strings as field delimiters instead of single characters.
To this purpose the option -D is provided.
Assume that file register1 and file register2 contain
--A: +1.0--- --B: -2.0--- --C: +3.0--- --D: -4.0--- --E: +5.0--- --F: -6.0---
and
--a: +1.1--- --b: -2.2--- --c: +3.3--- --d: -4.4--- --e: +5.5--- --f: -6.6---
respectively. Assume in addition, you would like that the dashes
at the begin and at the end of every line are treated as delimiters and then
neglected during the line by line comparison. To obtain this you cannot just
specify the character - (minus) as delimiter via the option
-s: if you do it, the negative numbers appearing in the
two files will be treated as positive, since the minus sign will be regarded
as a delimiter. By means of the option -D you can tell numdiff
to consider the strings -- and --- as field delimiters,
but not the single character -.
To see this in practice, look at the output of the command
‘numdiff -D ': -- --- \s \n' register1 register2’:
---------------- ##1 #:1 <== A ##1 #:1 ==> a @ ##1 #:2 <== +1.0 ##1 #:2 ==> +1.1 Absolute error = 1.0000000000e-1, Relative error = 1.0000000000e-1 ---------------- ##2 #:1 <== B ##2 #:1 ==> b @ ##2 #:2 <== -2.0 ##2 #:2 ==> -2.2 Absolute error = 2.0000000000e-1, Relative error = 1.0000000000e-1 ---------------- ##3 #:1 <== C ##3 #:1 ==> c @ ##3 #:2 <== +3.0 ##3 #:2 ==> +3.3 Absolute error = 3.0000000000e-1, Relative error = 1.0000000000e-1 ---------------- ##4 #:1 <== D ##4 #:1 ==> d @ ##4 #:2 <== -4.0 ##4 #:2 ==> -4.4 Absolute error = 4.0000000000e-1, Relative error = 1.0000000000e-1 ---------------- ##5 #:1 <== E ##5 #:1 ==> e @ ##5 #:2 <== +5.0 ##5 #:2 ==> +5.5 Absolute error = 5.0000000000e-1, Relative error = 1.0000000000e-1 ---------------- ##6 #:1 <== F ##6 #:1 ==> f @ ##6 #:2 <== -6.0 ##6 #:2 ==> -6.6 Absolute error = 6.0000000000e-1, Relative error = 1.0000000000e-1 +++ File "register1" differs from file "register2"
The argument ‘-D ': -- --- \s \n'’ instructs numdiff to
regard every occurrence of a colon (:), of a blank (\s),
of a newline (\n), as well as every occurrence of the strings
-- and --- as field delimiters. The minus sign in
front of the negative numbers is then properly handled.
In general the argument to the option -D is a blank separated sequence of one or more strings each of which contains no blank. Thus, the general form of the argument to the option -D is
string1 string2 ... stringN
where string1, string2, and so on are sequences of one or more characters (strings) containing no blank.
Mind that at least one of these strings must be ‘\n’. In addition, if a string contains the newline character, this must be the only one: strings like ‘#\n’, ‘%%\n’, or ‘\s\n’ are not allowed (entering such a string makes the program terminate after issuing a warning message).
Since the blank character has a special meaning for the shell, if the argument of -D is formed by two or more strings it should be quoted either with a single (‘'’) or with a double quote (‘"’). Quoting is also adviced if one of the strings passed to -D contains a character (or a sequence of characters) having a special meaning for the shell.
For the usage of single and double quoting to delimit the argument of -D the same warnings and recommendations apply as for the argument of -s.
If you want to set as delimiter a string which contains one or more blanks, then you have to make use of the escape sequence \s, like in the example above: within the argument of -D the blank character is always interpreted as a separator of adjacent delimiters.
More generally, when writing the argument of -D the same escape sequences are allowed as for the argument of -s. This turns out to be particularly useful whenever a multibyte character is used as delimiter in (one of) the files to compare. As example consider the comparison between ledger1:
In Out Jan 1200.00€ 1000.00€ Feb 800.40€ 650.00€ Mar 1620.50€ 1500.00€ Apr 760.00€ 900.00€ Total 4380.90€ 4050.00€ Difference: +330.90€
and ledger2:
In Out Jan 1100.00€ 1000.00€ Feb 800.40€ 750.00€ Mar 1620.50€ 1700.00€ Apr 750.00€ 900.00€ Total 4270.90€ 4350.00€ Difference: -79.10€
Since the Euro symbol is attached to all values,
numdiff cannot compare them in the proper way
if it is run with the default field delimiters, as
the output of the command ‘numdiff ledger1 ledger2’ shows:
---------------- ##3 #:2 <== 1200.00€ ##3 #:2 ==> 1100.00€ @ ---------------- ##4 #:3 <== 650.00€ ##4 #:3 ==> 750.00€ @ ---------------- ##5 #:3 <== 1500.00€ ##5 #:3 ==> 1700.00€ @ ---------------- ##6 #:2 <== 760.00€ ##6 #:2 ==> 750.00€ @ ---------------- ##8 #:2 <== 4380.90€ ##8 #:2 ==> 4270.90€ @ ##8 #:3 <== 4050.00€ ##8 #:3 ==> 4350.00€ @ ---------------- ##10 #:2 <== +330.90€ ##10 #:2 ==> -79.10€ @ +++ File "ledger1" differs from file "ledger2"
The trick to perform the comparison in the proper way consists
in specifying the € symbol as field delimiter, in addition
to blank, horizontal tabulation and newline.
If ledger1 and ledger2 are encoded in UTF-8,
this can be done by using the option -D with the argument
‘\xE2\x82\xAC \s \t \n’, since the hexadecimal representation
of € in UTF8 is given by the byte sequence 0xE2 0x82 0xAC.
On my PC the output of the command
‘numdiff -D '\xE2\x82\xAC \s \t \n' ledger1 ledger2’
shows that with such a choice of the delimiters numdiff performs
indeed a numerical comparison of the values contained in the two files:
---------------- ##3 #:2 <== 1200.00 ##3 #:2 ==> 1100.00 Absolute error = 1.0000000000e+2, Relative error = 9.0909090909e-2 ---------------- ##4 #:3 <== 650.00 ##4 #:3 ==> 750.00 Absolute error = 1.0000000000e+2, Relative error = 1.5384615385e-1 ---------------- ##5 #:3 <== 1500.00 ##5 #:3 ==> 1700.00 Absolute error = 2.0000000000e+2, Relative error = 1.3333333333e-1 ---------------- ##6 #:2 <== 760.00 ##6 #:2 ==> 750.00 Absolute error = 1.0000000000e+1, Relative error = 1.3333333333e-2 ---------------- ##8 #:2 <== 4380.90 ##8 #:2 ==> 4270.90 Absolute error = 1.1000000000e+2, Relative error = 2.5755695521e-2 ##8 #:3 <== 4050.00 ##8 #:3 ==> 4350.00 Absolute error = 3.0000000000e+2, Relative error = 7.4074074074e-2 ---------------- ##10 #:2 <== +330.90 ##10 #:2 ==> -79.10 Absolute error = 4.1000000000e+2, Relative error = 5.1833122630e+0 +++ File "ledger1" differs from file "ledger2"
If ledger1 and ledger2 had been saved using a multi-byte encoding different from UTF-8, then the sequence of bytes which corresponds to € in this other encoding should have been passed to -D.
As for -s, with -D you can specify different delimiters
for the two files to compare by means of the prefixes ‘1:’ and ‘2:’,
like in ‘numdiff -D '1:\t \n' -D '2: -- \s \n' first_file second_file’.
The recommendations about quoting the set of delimiters
are valid also in presence of a prefix.
Mind that, if you provide an explicit set of delimiters for just one of the
files to compare, numdiff uses the default field
delimiters blank, tab and newline
for the other file.
If you run Numdiff with the option -B (--binary) on files created under MSDog/MSWindoze, you should always include the character ‘\r’ in the set of field delimiters.
The option -s and -D can appear more than once
on the command line. In case of conflicts, numdiff
assumes as set of delimiters for a given file the one
specified last on the command line.
By means of the option -# the user can set the number of digits
in the significands used in multiple precision arithmetic.
The default value is 35, the largest admissible value is 180.
If numdiff has been linked against the
GNU Multiple Precision Arithmetic Library (also called GNU MP),
then the precision it uses is typically higher
than the specified one. On my machine the actual value
of the precision is 20 if the user requests a value between 0 and 20,
30 if the user specifies a precision between 21 and 30,
40 for a user-specified value between 31 and 40, and so on.
Anyway, the actual precision is never less than
the one requested by the user.
Take into account that an higher precision makes the
execution of numdiff slower. This is particularly
true if numdiff is not using the computational routines
from the GNU MP library and the files to compare contain a lot of numerical fields.
In addition, mind that numdiff truncates
the value of a numerical field if it has too much digits with respect
to the current precision. To be precise, denoted by
P the current value of the precision, the following
rules apply.
numdiff has been built with
its own internal support for multiple precision arithmetic, then
numdiff
will consider, in addition to all digits of the integer part, only
the first P digits of the fractional part;
numdiff
will only consider the first P digits of the fractional part
of the mantissa.
numdiff uses the routines from the GNU MP library
to perform its computations, the value of a numerical
field is first translated into scientific notation and then
only the first P digits of the fractional part
of the mantissa are considered.
You can find out whether your local version of numdiff
is relying on GNU MP or not by executing the command ‘numdiff -v’.
If numdiff uses GNU MP, then this command will display
the following message or similar (possibly translated
into your mother language) among other information:
The software has been linked against the GNU Multiple Precision Arithmetic Library, version number 4.2.4.
If numdiff does not rely on GNU MP, then
the displayed message will be (up to translation into
your mother language)
The software has been built with its own internal support for multiple precision arithmetic.
By means of the option -c the user can qualify a string as a symbol or name for a currency. The string passed as argument to this option is ignored whenever it appears immediately before the first digit of a number. In particular, the presence of this string does not prevent a field from being considered of numeric type. By prefixing the argument of -c with ‘1:’ or ‘2:’ it is possible to set the currency name/symbol only for one of the compared files, or to specify different currency names for the two files. As example we consider the files money1:
Profits Expenses +$430.10 -$300.50 +$750.20 -$550.02 +$876.24 -$720.00 Totals $2056.54 -$1570.52
and money2:
Profits Expenses USD430.10 -USD300.50 USD750.20 -USD550.02 USD876.24 -USD720.15 Totals 2056.54 -1570.67
To properly compare them, we have to tell numdiff
that ‘$’ and ‘USD’ are the currency symbols for
money1 and money2, respectively.
This can be achieved by ‘-c 1:$’ and ‘-c 2:USD’.
The output of the command ‘numdiff -c 1:$ -c 2:USD money1 money2’ is
---------------- ##5 #:2 <== -$720.00 ##5 #:2 ==> -USD720.15 Absolute error = 1.5000000000e-1, Relative error = 2.0833333333e-4 ---------------- ##7 #:3 <== -$1570.52 ##7 #:3 ==> -1570.67 Absolute error = 1.5000000000e-1, Relative error = 9.5509767466e-5 +++ File "money1" differs from file "money2"
as it is reasonable to expect.
The argument of -c may also be a multi-byte string, in particular a multi-byte string encoded in UTF-8. If your locale uses UTF-8 as encoding, you can write the argument directly in this form. For instance, you can write ‘-c €’ to specify as currency name the Euro symbol. If your locale does not use UTF-8 as encoding, or UTF-8 is not supported by your terminal, you may still write an UTF-8 encoded string as a multi-byte string by specifying each single byte of every (multi-byte) character. To this purpose you can use the same octal and hexadecimal escape sequences recognized by the options -s and -D, but then the argument of -c has to be quoted to avoid the interpretation of the hexadecimal escape sequences by the shell.
For example, if the files to compare are encoded in UTF-8,
you can set € as currency name by
adding ‘-c '\xE2\x82\xAC'’ to the command line of
numdiff, since the hexadecimal representation
of € in UTF-8 is given by the sequence of bytes
0xE2 0x82 0xAC.
To see this in practice, if euro1 contains the text
Profits Expenses +€430.10 -€300.50 +€750.20 -€550.02 +€876.24 -€720.00
and euro2 the text
Profits Expenses +€430.10 -€300.00 +€750.20 -€550.02 +€876.00 -€720.00
then the report of ‘numdiff -c '\xE2\x82\xAC' euro1 euro2’ is
---------------- ##3 #:2 <== -€300.50 ##3 #:2 ==> -€300.00 Absolute error = 5.0000000000e-1, Relative error = 1.6666666667e-3 ---------------- ##5 #:1 <== +€876.24 ##5 #:1 ==> +€876.00 Absolute error = 2.4000000000e-1, Relative error = 2.7397260274e-4 +++ File "euro1" differs from file "euro2"
Please consider that -c
is only provided to let numdiff regard
a field as numeric also in presence of a currency name
immediately before its first digit: numdiff
does not know anything about currencies and can not perform any
kind of conversion between them.
In addition, mind that the number after the currency name
can be written in any format, not only in financial notation.
numdiff can even cope with the currency name
when it appears in a complex number. For example,
with ‘-c EUR’ numdiff considers
+EUR12-EUR0.24i and +12-0.24i
as equal.
The options -d, -t, -g,
-p, -n, -e and -i can be used
to instruct numdiff about the numeric formats used in the
files which it is going to compare.
Since the two files to compare do not have to adopt the same numeric format,
numdiff allows to specify different numeric formats for them.
Each of the options -d, -t, -g,
-p, -n, -e, and -i
can have as argument one or two (single-byte) characters, in particular
one or two digits if the option is -g. In the first case
the argument refers to both files to compare, in the second case
the first character is for the file specified
first on the command line, the second character for
the file specified last.
For instance, the option -d can be used to
tell numdiff which character(s) is(are)
used to indicate the decimal point in the two files to compare.
If you give the command
‘numdiff -d_ file1 file2’,
then numdiff will understand that both in file1 and in file2
the character underscore (‘_’) is used in place
of the default one (‘.’) to indicate
the position of the decimal point in the numerical values.
But if the command is
‘numdiff -d_: file1 file2’,
then numdiff will understand that the decimal point
is indicated by the character underscore in file1,
and by colon (‘:’) in file2.
If you omit to use one of the options -d, -t, -g, -p, -n, -e, and -i, then the corresponding attribute will take its default value, see Default Numeric Format.
You should be careful whenever you use one or more of these options.
First, not all characters can be passed to them as arguments.
The arguments of the option -g must be digits,
the arguments of the options -d and -t must
be punctuation marks (punctuation marks are all the
characters of the ASCII set for which the standard C function
ispunct returns a non zero value), those ones
of the options -p, -n, -e and -i
must be graphical characters but digits (graphical characters
are all the characters of the ASCII set for which the standard C function
isgraph returns a non zero value).
It is not possible to set the decimal point, the thousands separator,
the positive sign, the negative sign, the
prefix for decimal exponent or the
symbol of the imaginary unit in such a way that, for a same file,
two or more of these characters come out to be equal.
This rule also applies if you miss/omit to explicitly select
a symbol through the appropriate option.
For instance, the command
‘numdiff -d,. file1 file2’
will make numdiff abnormally terminate after printing
the error message:
The numeric format specified for the first file is illegal, the following symbols should be all different while two or more of them are actually equal: Decimal point = `,' Thousands separator = `,' Leading positive sign = `+' Leading negative sign = `-' Prefix for decimal exponent = `e' Symbol used to denote the imaginary unit = `i'
With the option -d we have told numdiff
that in the first file the decimal point is indicated by the character
comma, but at the same time we have not modified the character
in use to separate the groups of thousands, which has remained the
default one, i.e. comma, for both files to compare.
In this way we have implicitly told that in
file1 the character comma represents both decimal point
and thousands separator. Since this is not reasonable, numdiff
refuses to work.
To avoid this problem it would be sufficient to
set explicitly the thousands separator
by means of the option -t:
‘numdiff -d,. -t., file1 file2’.
Of course, we assume here that the decimal point
and the thousands separator are represented in file1
by comma and dot respectively, in
file2 by dot and comma.
I strongly suggest you, whenever you write a file, to avoid using the same symbol for two different things (like would be using comma for both decimal point and thousands separator), it is nonsense.
At last, it is possible (but silly) to specify
as argument for the options -d, -t, -g,
-p, -n, -e, or -i
one of the characters used as delimiters in the files to compare.
numdiff does not complain, but you have
to consider that the program first uses the set of field delimiters
to split the files into fields and only afterwards, when it has to distinguish
between numerical and non-numerical fields, it takes
into account the numeric formats specified for the two files.
To prevent conflicts, you should then avoid to specify as argument for
the options -d, -t, -g,
-p, -n, -e, or -i a character
which is also used as field delimiter.
As a general rule, in writing a file you should avoid using the same symbol
to mean two different things.
What we have said also explains why the argument
of the option -c should never contain field delimiters.
The option -X can be used
to restrict the comparison between files to a certain
group of fields.
This option requires as argument a range of positive integer values
or eventually just one positive integer number. The argument indicates
the position(s) of the fields that numdiff has to ignore.
Remember that the fields of a line are numerated starting
from the left hand of the line
and proceeding towards the right hand.
The argument passed to -X can start with a prefix, which must be either ‘1:’ or ‘2:’. ‘1:’ refers to the file passed as first on the command line, ‘2:’ to the file specified as second. With the prefix ‘1:’ only the fields of the first file corresponding to the specified position(s) are ignored. Similarly, you have to use the prefix ‘2:’ if you want to ignore only fields from the second file.
The option -X can appear more times on the command line,
in which case numdiff will ignore all fields
located in the positions so specified.
Some examples can clarify the use of ranges and prefixes.
If the file List1 contains the data
* a 1 1 1 1 * b 2 2 2 2 * c 3 3 3 3 * d 4 4 4 4 * e 5 5 5 5
and List2 the data
1 1.1 1.01 A 1.001 1.0001
2 2.2 2.02 B 2.002 2.0002
3 3.3 3.03 C 3.003 3.0003
4 4.4 4.04 D 4.004 4.0004
5 5.5 5.05 E 5.005 5.0005
then the output of ‘numdiff -X 1:1-2 -X 2:4 -X 1:6 -X 2:5-6 List1 List2’ is
---------------- ##1 #:4 <== 1 ##1 #:2 ==> 1.1 @ Absolute error = 1.0000000000e-1, Relative error = 1.0000000000e-1 ##1 #:5 <== 1 ##1 #:3 ==> 1.01 @ Absolute error = 1.0000000000e-2, Relative error = 1.0000000000e-2 ---------------- ##2 #:4 <== 2 ##2 #:2 ==> 2.2 @ Absolute error = 2.0000000000e-1, Relative error = 1.0000000000e-1 ##2 #:5 <== 2 ##2 #:3 ==> 2.02 @ Absolute error = 2.0000000000e-2, Relative error = 1.0000000000e-2 ---------------- ##3 #:4 <== 3 ##3 #:2 ==> 3.3 @ Absolute error = 3.0000000000e-1, Relative error = 1.0000000000e-1 ##3 #:5 <== 3 ##3 #:3 ==> 3.03 @ Absolute error = 3.0000000000e-2, Relative error = 1.0000000000e-2 ---------------- ##4 #:4 <== 4 ##4 #:2 ==> 4.4 @ Absolute error = 4.0000000000e-1, Relative error = 1.0000000000e-1 ##4 #:5 <== 4 ##4 #:3 ==> 4.04 @ Absolute error = 4.0000000000e-2, Relative error = 1.0000000000e-2 ---------------- ##5 #:4 <== 5 ##5 #:2 ==> 5.5 @ Absolute error = 5.0000000000e-1, Relative error = 1.0000000000e-1 ##5 #:5 <== 5 ##5 #:3 ==> 5.05 @ Absolute error = 5.0000000000e-2, Relative error = 1.0000000000e-2 +++ File "List1" differs from file "List2"
Numdiff cuts off from List1 the fields in the positions 1, 2 and 6 and from List2 the fields in the positions 4, 5 and 6. In this way it compares the third, fourth and fifth field of every line of List1 with the first, second and third field respectively of the corresponding line of List2. An equivalent form of the command ‘numdiff -X 1:1-2 -X 2:4 -X 1:6 -X 2:5-6 List1 List2’ is given by ‘numdiff -X 1:1-2 -X 2:4-5 -X 6 List1 List2’ : since the sixth field is cut off from both files, we can refer to it without a prefix.
As you can see, you can specify a range of fields by using the notation ‘m-n’, where m and n are the field numbers of the first and of the last field in the range. It is even possible to use range expressions like ‘m-’ or ‘-n’. The first expression corresponds to all fields starting from the mth one (inclusive) till to the end of line, the second selects all fields from the first one till to the nth one (inclusive). Therefore the command ‘numdiff -X 1:1-2 -X 2:4 -X 1:6 -X 2:5-6 List1 List2’ is equivalent to ‘numdiff -X 1:-2 -X 2:4 -X 1:6 -X 2:5- List1 List2’ and to ‘numdiff -X 1:-2 -X 1:6 -X 2:4- List1 List2’.
Mind that, while writing a specification for the option -X, the largest field number you can use is 32768.
If you employ the option -X the exit status of numdiff
reflects the outcome of the restricted comparison.
For instance, the exit status of ‘numdiff -X 8- file1 file2’
is 1 only if numdiff has found a difference
in the first seven fields of file1 and file2.
If the two files differ only in the fields after the seventh one,
then numdiff ends with a zero exit status.
Going back to the example with List1 and List2, the output of ‘numdiff -X 1:1-2 -X 1:4- -X 2:2- List1 List2’ is
+++ Files "List1" and "List2" are equal
since every field of List1 at position 3 is equal to the first field in the corresponding line of List2. The exit code returned by the program to the shell is in this case zero.
The options -z, -Z, -m, -H, -f, and -T influence the action of the filter and their use is then described later, Filtering. Care that -z and -Z need both an argument in the same form required by -X.
Since version 5 Numdiff accepts also long options to conform to the GNU standards. For example, now it is possible to use ‘--separators='\n\t %'’ or ‘--separators '\n\t %'’ instead of using ‘-s '\n\t %'’.
The long options, which start all with two dashes, are listed at the beginning of this chapter, each one near to the corresponding short option.
The argument of a long option may or may not be preceded by the = sign. The only exceptions are the options --test-filter and --overview, for which the presence of the = before the argument is mandatory. Thus, ‘--test-filter=60’ is correct while ‘--test-filter 60’ is not accepted.
Next: Invoking ndselect, Previous: Invoking numdiff, Up: Top [Contents][Index]
Together with the version 5.x of Numdiff is shipped the program ndselect.
Originally, I decided to create this utility in order to deal with a situation
that comes out often in Numerical Analysis. Here I present a very simple example of
such a situation. Let us suppose that file list1
contains the values of the square root, rounded to the 20th decimal digit,
for all integer numbers between 12 and 24:
12 3.46410161513775458705 13 3.60555127546398929312 14 3.74165738677394138558 15 3.87298334620741688518 16 4 17 4.12310562561766054982 18 4.24264068711928514641 19 4.35889894354067355224 20 4.47213595499957939282 21 4.58257569495584000659 22 4.69041575982342955457 23 4.7958315233127195416 24 4.89897948556635619639
File list2 contains suitable approximations of the square root only for the numbers between 12 and 21 which are multiple of 3:
12 3.46410162002945508100 15 3.87298387096774193548 18 4.24264705882352941176 21 4.58260869565217391304
These approximations could have been obtained
by using the famous Heron’s algorithm: given an approximation
a for the square root of a number x, a better
approximation is computed by using the formula a := 0.5 * (x/a + a).
What we want now is to understand by means of numdiff
how good the approximations contained in file list2 are.
Unfortunately, we cannot execute directly the command
‘numdiff list1 list2’, since in this way we would compare
the approximations provided for the square roots of 15, 18, and 21
with the square roots of 13, 14, and 15, respectively.
To make the comparison in the right way,
one could open list1 in a text editor and remove from this file
all lines but the ones related to the numbers 12, 15, 18, and 21.
This approach is practicable since we have to remove only a few lines:
one can easily figure out how boring and inefficient would be to manually
remove hundreds or thousands of lines from a file.
An expert GNU user would suggest that it is
possible to automate this removal by using the well known utilities
head and sed, in this particular case
‘head -n 10 list1 | sed -n -e '1~3 p' > List1’.
A quick explanation for the ones who do not know how to use head
and sed: the previous command extracts from
list1 the first 10 lines, namely the lines containing the square roots
of the numbers from 12 to 21, then picks every third line starting
from the first one to select only the lines related to 12, 15, 18, and 21.
Finally, these lines are printed to the file List1,
which then looks like:
12 3.46410161513775458705 15 3.87298334620741688518 18 4.24264068711928514641 21 4.58257569495584000659
Once obtained List1, we can perform the comparison between
the values we are interested in by means of ‘numdiff List1 list2’ .
Unfortunately, this trick only works if you have installed the GNU version
of sed which, as far as I know, is the only one
providing the extension first~step to specify line addresses.
This is why I decided to implement ndselect, which allows to
obtain the same result as above with the simpler command
‘ndselect -b 1 -e 10 -s 3 list1 > List1’.
The meaning of the arguments passed to the options -b,
-e, and -s is the following: we tell
ndselect to print every third line of file list1
(the option -s specifies the step)
starting from the first one (the option -b specifies the beginning)
and ending within the tenth one possibly inclusive
(the option -e specifies the end).
Because of the presence of the redirection operator >,
the previous command sends to the file List1
what ndselect would print to the screen (standard output).
Since version 5.6 ndselect can also be used to select
particular fields of a file.
Instead of printing all fields of every line, you may want to print
indeed only the fields at particular positions.
To do this you can employ the option -F to
indicate the position of the first field to print,
the option -L to indicate the position of the last field that
can be printed, the option -I to set the increment
when selecting the fields. In addition, the option -S
can be used to specify a set of field delimiters different from the
default one (which consists of blank, tab and
newline). As for numdiff, the field
delimiters are used to split the input lines into fields.
The option -S of ndselect
recognizes and accepts the same escape sequences of
numdiff options -s, -D, and -c.
As example consider the selection of the even fields between the second and the sixth one inclusive from the file many_many_columns, whose contents are shown here:
A | I | 1.1 | 1.08 | 1.01 | 0.1 | 11.011 | -1.0e-1 B | II | 2.2 | 2.16 | 4.04 | 0.4 | 24.024 | -1.0e-2 C | III | 3.3 | 3.24 | 9.09 | 0.9 | 39.039 | -1.0e-3 D | IV | 4.4 | 4.32 | 16.16 | 1.6 | 416.039 | -1.0e-4 E | V | 5.5 | 5.40 | 25.25 | 2.5 | 525.416 | -1.0e-5 F | # | # | # | # | # | # | #
This selection can be accomplished by means of the command ‘ndselect -S '| \t\n' -F 2 -L 6 -I 2 many_many_columns’, whose output shows only the selected fields:
I | 1.08 | 0.1 II | 2.16 | 0.4 III | 3.24 | 0.9 IV | 4.32 | 1.6 V | 5.40 | 2.5 # | # | #
Of course, you can also select particular fields of particular lines, as shown by the output of the command ‘ndselect -S '| \t\n' -b 1 -e 5 -s 3 -F 2 -L 6 -I 2 many_many_columns’:
I | 1.08 | 0.1 IV | 4.32 | 1.6
By default, ndselect reuses the delimiters found in the input
lines while writing the selected fields to the standard output.
You can specify a custom separator by means of the option -O.
This one recognizes and accepts the same escape sequences of
numdiff options -s, -D, and -c.
For example,
‘ndselect -S '| \t\n' -b 1 -e 5 -s 3 -F 2 -L 6 -I 2 -O '\t\t' many_many_columns’
puts two horizontal tabulations after every printed field:
I 1.08 0.1 IV 4.32 1.6
Even if the implementation of a filter in numdiff and the addition
of the option -X have made ndselect much less useful than
in the past, this tool can still be used to handle some special cases.
In addition, it can be used as a filter for other programs than numdiff.
The complete synopsis of ndselect can be found in the
next chapter.
SYNOPSIS
ndselect -h|--help|-v|--version
or
ndselect [-b N][-e N][-s N][-F N][-L N][-I N][-S IFS][-D DELIMS] [-O OSEP][-x][-l PATH][-o PATH][FILE]
where FILE is the name of the file to read from.
In the first case ndselect prints a
short help or/and version number, Copyright, License notice,
and NO-Warranty disclaimer.
In the second case ndselect prints to the standard output
a subset of lines and fields from FILE.
The complete path of FILE should be given,
a directory name is not accepted.
If no input file is specified, the program reads from the standard input.
OPTIONS
Set to N the number of the first line to print (The default behavior is to start with line number 1)
Set to N the number of the last line that can be printed (The default behavior is to arrive till to the end of the file)
Set to N the increment to use when selecting the lines to print (The default value for the increment is 1)
Set to N the number of the first field to print (The default behavior is to start with field number 1)
Set to N the number of the last field that can be printed (The default behavior is to arrive till to the end of every line)
Set to N the increment to use when selecting the fields to print (The default value for the increment is 1)
Specify the set of characters to use as delimiters while splitting the input lines into fields (The default set of delimiters is space, tab and newline)
Specify the set of strings to use as delimiters while splitting the input lines into fields (The default set of delimiters is space, tab and newline)
Specify the string to use as separator while writing the selected fields to the standard output (The default behavior consists in reusing the delimiters found in the input lines)
Do not print empty lines
Redirect warning and error messages from stderr to the indicated file
Redirect output from stdout to the indicated file
Show this help message
Show version number, Copyright, Distribution Terms and NO-Warranty
Passing 0 as argument to the option -L or to -e is equivalent to omit this option and leave enabled the default behavior (which consists in scanning till to the end of the line and of the file, respectively).
DIAGNOSTICS
The exit status is 0 in case of normal termination, -1 (255) in case of error.
As numdiff does, since version 5 also ndselect
accepts long options. Thus, instead of ‘ndselect -b 1 -e 10 -s 3 list1 > List1’
you can write ‘ndselect --start=1 --end=10 --step=3 list1 > List1’.
The usage of the option -D is the same as for numdiff.
The option -S corresponds to the option -s of numdiff.
Next: Warnings, Previous: Invoking ndselect, Up: Top [Contents][Index]
Since version 5 you can activate a filter
when launching numdiff to make the program appropriately compare
the given files even if they do not have the same structure.
Recalling the example of chapter 6,
if you run the command numdiff -z 2- -V list1 list2
you obtain the following result:
----------------
##1 <== 12 3.46410161513775458705
##1 ==> 12 3.46410162002945508100
##1 #:2 <== 3.46410161513775458705
##1 #:2 ==> 3.46410162002945508100
Absolute error = 4.8917004940e-9, Relative error = 1.4121122985e-9
----------------
##2 <== 13 3.60555127546398929312
==>
----------------
##3 <== 14 3.74165738677394138558
==>
----------------
##4 <== 15 3.87298334620741688518
##2 ==> 15 3.87298387096774193548
##4 #:2 <== 3.87298334620741688518
##2 #:2 ==> 3.87298387096774193548
Absolute error = 5.2476032505e-7, Relative error = 1.3549253331e-7
----------------
##5 <== 16 4
==>
----------------
##6 <== 17 4.12310562561766054982
==>
----------------
##7 <== 18 4.24264068711928514641
##3 ==> 18 4.24264705882352941176
##7 #:2 <== 4.24264068711928514641
##3 #:2 ==> 4.24264705882352941176
Absolute error = 6.3717042443e-6, Relative error = 1.5018250929e-6
----------------
##8 <== 19 4.35889894354067355224
==>
----------------
##9 <== 20 4.47213595499957939282
==>
----------------
##10 <== 21 4.58257569495584000659
##4 ==> 21 4.58260869565217391304
##10 #:2 <== 4.58257569495584000659
##4 #:2 ==> 4.58260869565217391304
Absolute error = 3.3000696334e-5, Relative error = 7.2013423303e-6
----------------
##11 <== 22 4.69041575982342955457
==>
----------------
##12 <== 23 4.7958315233127195416
==>
----------------
##13 <== 24 4.89897948556635619639
==>
+++ File "list1" differs from file "list2"
Numdiff has recognized that the lines of list1
with the square roots for the numbers
13, 14, 16, 17, 19, 20, 22, 23, and 24
have been deleted from list2.
The numerical comparison has been done by coupling each line of list2
with the line of list1 which displays the square root for the same
integer value. The output obtained running
the filter of Numdiff via numdiff -f -z 2- list1 list2
confirms this:
12 3.46410161513775458705 12 3.46410162002945508100 13 3.60555127546398929312 < 14 3.74165738677394138558 < 15 3.87298334620741688518 15 3.87298387096774193548 16 4 < 17 4.12310562561766054982 < 18 4.24264068711928514641 18 4.24264705882352941176 19 4.35889894354067355224 < 20 4.47213595499957939282 < 21 4.58257569495584000659 21 4.58260869565217391304 22 4.69041575982342955457 < 23 4.7958315233127195416 < 24 4.89897948556635619639 < +++ File "list1" differs from file "list2"
If you compare the command
numdiff -z 2- -V list1 list2 with the one
used for the files bill1 and
bill2, see command, you surely notice that the filter
has been invoked in different ways, first
with -z @ and then with -z 2-.
The synchronization procedure used by the filter is based on blurring and byte-by-byte comparison. The options -z and -Z are used to select which fields from which file have to be blurred. They take both an argument in the same form requested by -X, see Use of the option -X, but accept additionally the special value ‘@’ as abbreviation for the range of fields ‘1-’. Thus, the specifications ‘1:@’, ‘2:@’ and ‘@’ are used to mean all fields of the first file, of the second one or of both, respectively.
Employing -z and -Z in the right way
is extremely important to let the filter work as desired.
For instance, numdiff -f -z @ list1 list2
matches the lines of list1 and list2
in the same wrong way
12 3.46410161513775458705 12 3.46410162002945508100 13 3.60555127546398929312 15 3.87298387096774193548 14 3.74165738677394138558 18 4.24264705882352941176 15 3.87298334620741688518 21 4.58260869565217391304 16 4 < 17 4.12310562561766054982 < 18 4.24264068711928514641 < 19 4.35889894354067355224 < 20 4.47213595499957939282 < 21 4.58257569495584000659 < 22 4.69041575982342955457 < 23 4.7958315233127195416 < 24 4.89897948556635619639 < +++ File "list1" differs from file "list2"
as Numdiff would do without employing the filter.
It is essential then to understand what blurring a field means and how the filter uses blurring to match the lines of the files to compare.
After reading the files the filter removes from each of them (from their images in the memory, actually) all the fields selected by the option -X, then it replaces each of the fields that have to be blurred by a special character. This special character is the same for both files and it is so chosen that it cannot appear in the text. Blurring a field means to replace it by this sort of place card.
After doing this, the filter converts all remaining numerical fields to a standard format and then compares the files byte by byte neglecting the field delimiters. This comparison is just used to establish which lines of the first file are not present in the second, which lines of the second file are missing in the first one, and how to match the remaining lines to create a one-to-one correspondence.
Only at this point numdiff inspects each couple of corresponding lines,
splits the two lines into the constituent fields, and
neglecting those ones eventually specified through the option -X
compares corresponding fields as it is supposed to do, performing
a numerical comparison whenever the fields are both legal numerical values.
Blurring the right fields is essential to appropriately match the lines
from the two files before doing any numerical comparison.
Without blurring, the numerical fields could prevent the filter of
numdiff from an appropriate matching of the lines
by creating confusion with their (maybe small) numeric differences.
Blurring can be of two types, conditional or unconditional. The blurring is conditional if it has to be performed only for fields which turn out to be legal numerical values. The arguments of the option -z indicate which fields of which file have to be blurred under the condition that they are recognized as numeric fields. Non-numeric fields are left by -z untouched (no blurring occurs for them). Then ‘-z 1:5-7’ makes the filter blur the 5th, 6th and 7th field of each line of the first file whenever they are recognized as numeric.
By means of the option -Z you can specify which fields have to be unconditionally blurred, i.e. independently of their type, numeric or not. For example, ‘-Z 2:3-4’ activates the blurring of the 3th and 4th field of each line of the second file.
Going back to the comparison of the files list1 and list2, the option ‘-z 2-’ of the command ‘numdiff -z 2- -V list1 list2’ makes the filter transform the (memory copies of the) two files as
12 • 13 • 14 • 15 • 16 • 17 • 18 • 19 • 20 • 21 • 22 • 23 • 24 •
and
12 • 15 • 18 • 21 •
respectively. Here • denotes the special symbol used by the filter in the blurring procedure, even if this symbol is not actually a bullet. Since in this example space, tab and newline are used as field delimiters, the byte-by-byte comparison between the transformed files produces the same result displayed by the command ‘sdiff -W’ when applied to them:
12 • 12 • 13 • < 14 • < 15 • 15 • 16 • < 17 • < 18 • 18 • 19 • < 20 • < 21 • 21 • 22 • < 23 • < 24 • <
If you put the blurred fields back you obtain exactly the output of ‘numdiff -f -z 2- list1 list2’, i.e. the outcome of the filtering:
12 3.46410161513775458705 12 3.46410162002945508100 13 3.60555127546398929312 < 14 3.74165738677394138558 < 15 3.87298334620741688518 15 3.87298387096774193548 16 4 < 17 4.12310562561766054982 < 18 4.24264068711928514641 18 4.24264705882352941176 19 4.35889894354067355224 < 20 4.47213595499957939282 < 21 4.58257569495584000659 21 4.58260869565217391304 22 4.69041575982342955457 < 23 4.7958315233127195416 < 24 4.89897948556635619639 < +++ File "list1" differs from file "list2"
Since the second field is a numerical value in all lines of list1 and list2, using the option -Z instead of -z makes no difference in this case. The output of ‘numdiff -f -Z 2- list1 list2’ is then the same of ‘numdiff -f -z 2- list1 list2’.
After this explanation you should also understand why ‘numdiff -f -z @ list1 list2’ gives a wrong result. Since also the first field is always a numerical value, the option ‘-z @’ makes the filter transform the two given files as
• • • • • • • • • • • • • • • • • • • • • • • • • •
and
• • • • • • • •
respectively, making then impossible to match the lines in a reasonable way.
We consider now a typical situation in which it is better to use -Z in place of -z. If file Table1 contains
-6 2.449490 -5 2.236068 -4 2.000000 -3 1.732051 -2 1.414214 -1 1.000000 0 0 - - - - - - - - - 1 1.000000 2 1.414214 3 1.732051 4 2.000000 - - - - - - - - - 5 2.236068 6 2.449490 7 2.645751 - - - - - - - - - 8 2.828427 9 3.000000 10 3.162278 11 3.316625 12 3.464102 - - - - - - - - - - - - - - - - - - 13 3.605551 14 3.741657
and Table2 contains
-6 Not_defined -4 Not_defined -2 Not_defined 0 0.000000 2 1.414216 4 2.000000 6 2.449494 8 2.828469 10 3.162278 12 3.464102 14 3.741658 ********************END
then the output of ‘numdiff -z 1:2 -Z 2:2 -f Table1 Table2’ is
-6 2.449490 -6 Not_defined
-5 2.236068 <
-4 2.000000 -4 Not_defined
-3 1.732051 <
-2 1.414214 -2 Not_defined
-1 1.000000 <
0 0 0 0.000000
- - - - - - - - - <
1 1.000000 <
2 1.414214 2 1.414216
3 1.732051 <
4 2.000000 4 2.000000
- - - - - - - - - <
5 2.236068 <
6 2.449490 6 2.449494
7 2.645751 <
- - - - - - - - - <
8 2.828427 8 2.828469
9 3.000000 <
10 3.162278 10 3.162278
11 3.316625 <
12 3.464102 12 3.464102
- - - - - - - - - <
- - - - - - - - - <
13 3.605551 <
14 3.741657 14 3.741658
> ********************END
+++ File "Table1" differs from file "Table2"
which is exactly what is expected. On the other hand the command ‘numdiff -z 2 -f Table1 Table2’ displays
-6 2.449490 | -6 Not_defined
-5 2.236068 | -4 Not_defined
-4 2.000000 | -2 Not_defined
-3 1.732051 <
-2 1.414214 <
-1 1.000000 <
0 0 0 0.000000
- - - - - - - - - <
1 1.000000 <
2 1.414214 2 1.414216
3 1.732051 <
4 2.000000 4 2.000000
- - - - - - - - - <
5 2.236068 <
6 2.449490 6 2.449494
7 2.645751 <
- - - - - - - - - <
8 2.828427 8 2.828469
9 3.000000 <
10 3.162278 10 3.162278
11 3.316625 <
12 3.464102 12 3.464102
- - - - - - - - - <
- - - - - - - - - <
13 3.605551 <
14 3.741657 14 3.741658
> ********************END
+++ File "Table1" differs from file "Table2"
which is partially wrong.
Notice that in Table1 you find (truncated to the sixth decimal digit) the square roots of the absolute values of the integer numbers between -6 and 20, plus some randomly added lines. The file Table2 contains approximations (obtained by Newton’s method) of the square roots of the even numbers between -6 and 20. Since the (real) square root is not defined for negative numbers, the values corresponding to -6, -4 and -2 are replaced by Not_defined.
Since Not_defined is not a numeric value, during the execution of the last command the filter transforms Table1 in this way
-6 • -5 • -4 • -3 • -2 • -1 • 0 • - - - - - - - - - 1 • 2 • 3 • 4 • - - - - - - - - - 5 • 6 • 7 • - - - - - - - - - 8 • 9 • 10 • 11 • 12 • - - - - - - - - - - - - - - - - - - 13 • 14 •
and Table2 in this other way
-6 Not_defined -4 Not_defined -2 Not_defined 0 • 2 • 4 • 6 • 8 • 10 • 12 • 14 • ********************END
Unfortunately the first three lines are enough to confuse the synchronization procedure of the filter, which is based on a byte-by-byte comparison with exclusion of the field delimiters, as explained before.
You can check that this is definitely the case by looking at the output of the command ‘sdiff -W’ on the transformed files, which is
-6 • | -6 Not_defined
-5 • | -4 Not_defined
-4 • | -2 Not_defined
-3 • <
-2 • <
-1 • <
0 • 0 •
- - - - - - - - - <
1 • <
2 • 2 •
3 • <
4 • 4 •
- - - - - - - - - <
5 • <
6 • 6 •
7 • <
- - - - - - - - - <
8 • 8 •
9 • <
10 • 10 •
11 • <
12 • 12 •
- - - - - - - - - <
- - - - - - - - - <
13 • <
14 • 14 •
> ********************END
If we give the command ‘numdiff -z 1:2 -Z 2:2 -f Table1 Table2’ instead of ‘numdiff -z 2 -f Table1 Table2’, the second field of the lines of Table2 is always blurred. The filter transforms then Table2 into
-6 • -4 • -2 • 0 • 2 • 4 • 6 • 8 • 10 • 12 • 14 • ********************END
and re-synchronizes the files Table1 and Table2 in the right way.
Using the unconditional blurring is suggested in all cases when a certain field, which you want to include in the comparison (use -X to completely neglect one or more fields), is of numeric type in almost all lines of (one of) the given files. This can be for instance the case when in some lines the contents of the field are given by a special numeric value, like Infinity, Inf, +Inf or -Inf, or by NaN, abbreviation for Not a Number.
Concerning the numeric fields which are not blurred, it is worth remarking that the filter is not confused by differences in the numeric format. Before the byte-by-byte comparison, numeric values are converted indeed to a standard format. To offer an example of this, let us suppose that short1 contains a list of numbers with their logarithms
0.001 -3 0.01 -2 0.1 -1 1 0 1000 3 1000000 6 1000000000 9
and short2 the same list of numbers and logarithms, but with differences in the numeric format:
****************** 0.0010000 -3 .0100 -2 0000.10 -1 1. 0 1,000.000 3 1,000,000. 6 1,000,000,000 9
Then ‘numdiff -f -z 2- short1 short2’ displays
> ****************** 0.001 -3 0.0010000 -3 0.01 -2 .0100 -2 0.1 -1 0000.10 -1 1 0 1. 0 1000 3 1,000.000 3 1000000 6 1,000,000. 6 1000000000 9 1,000,000,000 9 +++ File "short1" differs from file "short2"
showing that the filter has matched the lines in the right way.
The filter can even handle the case when the same numerical value is written in decimal notation in one file and in scientific notation in the other one. If the files decimal and scientific contain
.001 -3 .01 -2 .1 -1 * * * * * * * * * 1 0 1000 3 1000000 6 1000000000 9
and
***************** 1.0e-3 -3 1.0e-2 -2 1.0e-1 -1 1.0e0 0 1.0e3 3 1.0e6 6 1.0e9 9 *****************
respectively, then ‘numdiff -f -z 2- decimal scientific’ prints
> *****************
.001 -3 1.0e-3 -3
.01 -2 1.0e-2 -2
.1 -1 1.0e-1 -1
* * * * * * * * * <
1 0 1.0e0 0
1000 3 1.0e3 3
1000000 6 1.0e6 6
1000000000 9 1.0e9 9
> *****************
+++ File "decimal" differs from file "scientific"
proving that the filter does not get confused.
No problems arise also in the case when for the same field the scientific notation is used in both files. If the files sc1 and sc2 contain
1.E-3 -3 1.00E-2 -2 1.0E-1 -1 1.0000E0 0 001.0E3 3 +01.000E6 6 1.0E+09 9 1.0E+10 10 * * * * * * * * * *
and
***************** 1.0e-003 -3 1.0e-2 -2 1.0e-1 -1 1.0e0 0 +1.0e3 3 1.0e+6 6 1.0e9 9
respectively, then ‘numdiff -f -z 2- sc1 sc2’ correctly displays
> ***************** 1.E-3 -3 1.0e-003 -3 1.00E-2 -2 1.0e-2 -2 1.0E-1 -1 1.0e-1 -1 1.0000E0 0 1.0e0 0 001.0E3 3 +1.0e3 3 +01.000E6 6 1.0e+6 6 1.0E+09 9 1.0e9 9 1.0E+10 10 < * * * * * * * * * * < +++ File "sc1" differs from file "sc2"
The filter can even handle an improper use of the scientific notation, meaning for example that it can recognize ‘123.456E+2’ and ‘1.23456E+4’ as equal.
We can see this in the case of the files Scnot1:
------------------------- 1.2E0 * 1 2.45E-1 * 2 -3.678E-2 * 3
and Scnot2:
12E-1 * 1 245E-3 * 2 -0.003678E+1 * 3
‘numdiff -f -z 3- Scnot1 Scnot2’ displays the report:
------------------------- < 1.2E0 * 1 12E-1 * 1 2.45E-1 * 2 245E-3 * 2 -3.678E-2 * 3 -0.003678E+1 * 3 +++ File "Scnot1" differs from file "Scnot2"
which is exactly what you would expect in such a case. Also pretty hard cases do not confuse the filter. If Scnot1 is given by
1.2000e0 * 1 02.4500e-1 * 2 -003.678E-2 * 3
and Scnot2 is the same file as before, the output of the command ‘numdiff -f -z 3- Scnot1 Scnot2’ is still right:
1.2000e0 * 1 12E-1 * 1 02.4500e-1 * 2 245E-3 * 2 -003.678E-2 * 3 -0.003678E+1 * 3 +++ Files "Scnot1" and "Scnot2" have the same structure
In all examples above the option -f is used with no argument.
However, -f accepts an optional argument, which can be used to control how -f displays its output. If you provide an argument, care not to leave any space between the option and the argument: ‘-f60’ is correct while ‘-f 60’ makes Numdiff terminate after printing an error message.
If the argument is a positive number NUM, then the side-by-side output produced by -f will be NUM columns wide. The default value for the width of the output is 130, which can fit onto a traditional printer line, and is the one used when -f has no argument, or the supplied argument is zero. In other words, ‘-f’ and ‘-f0’ are just easier to remind versions of ‘-f130’.
A negative argument has the same effect as the positive argument with the same absolute value, but it causes in addition the removal of common lines from the output. For example, the command ‘numdiff -z 1:2 -Z 2:2 -f-130 Table1 Table2’ displays the following text
-5 2.236068 <
-3 1.732051 <
-1 1.000000 <
- - - - - - - - - <
1 1.000000 <
3 1.732051 <
- - - - - - - - - <
5 2.236068 <
7 2.645751 <
- - - - - - - - - <
9 3.000000 <
11 3.316625 <
- - - - - - - - - <
- - - - - - - - - <
13 3.605551 <
> ********************END
+++ File "Table1" differs from file "Table2"
In conjunction with the option -f or -O you can use -T to expand tabs to spaces in the produced output. This is useful to preserve the alignment of tabs in the input files, if it is thrown off by the presence of the gutter.
The options -H and -m affect the performance of the filter of Numdiff. But performance has more than one dimension and these options improve one aspect of performance at the cost of another, or they improve performance in some cases while hurting it in others.
The re-synchronization of the two compared files made by the filter always comes up with a near-minimal set of deletions/insertions of lines, that usually is good enough for practical purposes. If the filter displays a large set of line deletions/insertions, you might want it to use a modified algorithm that sometimes produces a smaller set of differences. The -m option does this; however, it can also cause the filter to run more slowly than usual, so it is not the default behavior.
If the files you are comparing are large and have small groups of changes scattered throughout them, you can use the -H option to make a different modification to the algorithm employed by the filter. If the input files have a constant small density of changes, where change means here deletion/insertion of lines, this option speeds up the comparison without changing the output or in the worst case introducing minor modifications.
numdiff: A number with a too small exponent has been found, namely "1.0001e-2147483640". Exponents smaller than -1073741824 are not accepted, the execution of the program ends now
numdiff: Insufficient memory for new allocation, the execution of the program ends now
In addition, you can overload the processor with numbers whose exponents lie outside the range -1000000, …, 1000000. But at least on my machine, everything works fine and quick enough as long as exponent and size of the mantissa of the numbers are in the range -1000, …, 1000. Be careful and remember that Numdiff is distributed WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Consider also that, if you have numeric data with exponents outside the range -300, …, 300, probably there is something wrong with your data: either you are using the wrong scale, or you should replace very small numbers, like 1e-100, by zero, or it is quite likely that the machine/program/algorithm which produced these data is not working right.
If numdiff has been built with
its own internal support for multiple precision arithmetic, then
numdiff
will consider, in addition to all digits of the integer part, only
the first P digits of the fractional part;
numdiff
will only consider the first P digits of the fractional part
of the mantissa.
If numdiff uses the GNU MP library
to perform its computations, the value of a numeric
field is first translated into scientific notation and then
only the first P digits of the fractional part
of the mantissa are considered.
By current value of the precision I mean the integer value specified by the option -#, or the default one (35) when this option is not in use.
numdiff
is relying on GNU MP or not by executing the command ‘numdiff -v’.
If numdiff uses GNU MP, then this command will display
the following message or similar (possibly translated
into your mother language) among other information:
The software has been linked against the GNU Multiple Precision Arithmetic Library, version number 4.2.4.
If numdiff does not rely on GNU MP, then
the displayed message will be (up to translation into
your mother language)
The software has been built with its own internal support for multiple precision arithmetic.
numdiff checks
for the presence of null bytes (0x00) in the file.
::::3.0-5.6e-356i::::-12.9 +4.34i::::-12.9 4.34i::::New York::::
then it will consider this line as formed by four fields, the first two are numeric and given by the complex numbers 3.0-5.6e-356i and -12.9+4.34i, the last two ones are the strings New York and -12.9 4.34i. I still do not know if I will modify this in the next version of Numdiff, so that the program recognizes only 3.0-5.6e-356i as numeric field and treats -12.9 +4.34i as non-numeric due to the presence of spaces in the middle. -12.9 4.34i is already considered as non-numeric due to the absence of a leading sign in the imaginary value.
numdiff
can be -, which refers to stdin (standard input). In this way one of
the two files to compare can be the output produced by another
command, like in ‘cat file2 | numdiff -a 1.0e-3 file1 -’.
However, if you activate the filter by means of the options -z or/and
-Z, Numdiff can not work with the standard input unless you
use also the option -f. Therefore, the command
‘cat file2 | numdiff -a 1.0e-3 -z @ file1 -’
displays only the error message
numdiff: -: Illegal seek
(or maybe the translation of this message in the language you are using on your computer) but ‘cat file2 | numdiff -a 1.0e-3 -z @ -f file1 -’ works as expected.
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By major numerical differences and major errors
I mean those ones listed in the output of numdiff if none
of the options -U, -f, -O, and -q is used.